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fix doc generation to include deleted files
motivation: in git 2.0 deleted files are ignored unless --all is specified ``` warning: You ran 'git add' with neither '-A (--all)' or '--ignore-removal', whose behaviour will change in Git 2.0 with respect to paths you removed. Paths like 'docs/current/NIOOpenSSL/Classes.html' that are removed from your working tree are ignored with this version of Git. ``` changes: use git add -all docs to includes removeals
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