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updates readme and removes docker action and file
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raphenya committed Jan 5, 2024
1 parent 5ef7622 commit 249106f
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34 changes: 0 additions & 34 deletions .github/workflows/dockerpublish.yml

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40 changes: 0 additions & 40 deletions Dockerfile

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22 changes: 5 additions & 17 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -211,34 +211,22 @@ Remove RGI package:
Install RGI using Docker/Singularity
------------------------------------

RGI is available via dockerhub or biocontainers full installed with all
RGI is available via biocontainers full installed with all
databases appropriately loaded.

Install `docker <https://docs.docker.com/get-docker/>`_ on your system if not already available

- Pull the Docker container from dockerhub (built from Dockerfile in repository) or biocontainers (built from Conda package).
- Pull the Docker container from biocontainers (built from Conda package at https://quay.io/repository/biocontainers/rgi?tab=tags&tag=latest).

.. code-block:: sh
docker pull finlaymaguire/rgi:latest
docker pull quay.io/biocontainers/rgi:6.0.3--pyha8f3691_0
Or
- RGI can be executed from the container as follows:

.. code-block:: sh
docker pull quay.io/biocontainers/rgi:5.1.1--py_0
- RGI can be executed from the containers as follows:

.. code-block:: sh
docker run -v $PWD:/data finlaymaguire/rgi rgi -h
Or

.. code-block:: sh
docker run -v $PWD:/data quay.io/biocontainers/rgi:5.1.1--py_0 rgi -h
docker run -v $PWD:/data quay.io/biocontainers/rgi:6.0.3--pyha8f3691_0 rgi -h
Install Development Version
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