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bedtools intersect bed with vcd: Received illegal bin number 4294967295 from getBin call #626

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yipukangda opened this issue Mar 12, 2018 · 0 comments
Closed

bedtools intersect bed with vcd: Received illegal bin number 4294967295 from getBin call #626

yipukangda opened this issue Mar 12, 2018 · 0 comments
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int64 issues that will be fixed with CHRPOS as int64

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@yipukangda
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Hi,

bedtools v2.26.0-148-gd1953b6
cmd

bedtools intersect -a tmp.bed -b tmp2.vcf

error

ERROR: Received illegal bin number 4294967295 from getBin call.
ERROR: Unable to add record to tree.

I suspect bedtools have not consider vcf format very well, because I copy the second line of the target vcf to the third and it works then.

Thanks.
@brentp brentp added the int64 issues that will be fixed with CHRPOS as int64 label Mar 21, 2019
@arq5x arq5x closed this as completed Mar 22, 2019
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@brentp @arq5x @yipukangda