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Dev #2

Merged
merged 18 commits into from
Aug 21, 2022
Merged

Dev #2

merged 18 commits into from
Aug 21, 2022

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asp8200
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@asp8200 asp8200 commented Aug 21, 2022

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

FriederikeHanssen and others added 18 commits August 15, 2022 21:05
@FriederikeHanssen
freec ploidy number -> String
82f563d
@FriederikeHanssen
update changelog
23103b5
@FriederikeHanssen
also update config
baa917f
@FriederikeHanssen
unfortuantely also needs to be ignored by validation
ce4b0a8
@FriederikeHanssen
Merge pull request nf-core#704 from FriederikeHanssen/fix_schema
1a7a571 
freec ploidy number -> String
@FriederikeHanssen
fix loftee needing vep_version
7497c28
@FriederikeHanssen
Merge remote-tracking branch 'upstream/dev' into loftee
78e2054
@FriederikeHanssen
update changelog
eb4bc9c
@maxulysse
Merge pull request nf-core#706 from FriederikeHanssen/loftee
cdf68a8 
Vep Issues: loftee needs version
update to include intervals
e47e59e
update changelog. Name release 3.0.1
3c34561
@nf-core-bot
[automated] Fix linting with Prettier
fbd2a23
@nickhsmith
Merge pull request nf-core#708 from nickhsmith/module-update-samtools…
a997aa1 
…-mpileup

update to include intervals
@FriederikeHanssen
update version for release
ad13803
@FriederikeHanssen
Merge pull request nf-core#709 from FriederikeHanssen/update_maps_301
ad2b34f 
update version for release
@FriederikeHanssen
back to business
c79acf0
@FriederikeHanssen
merge conflicts
7eefccd
@FriederikeHanssen
Merge pull request nf-core#710 from FriederikeHanssen/dev_301
15ac00d 
back to business
@asp8200 asp8200 merged commit 8228710 into md5_check_of_test_output Aug 21, 2022
maxulysse pushed a commit that referenced this pull request Mar 1, 2024
@nschcolnicov
Merge pull request #2 from nschcolnicov/tmp
eea2ea0 
Clean up code changes
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5 participants
@asp8200 @FriederikeHanssen @maxulysse @nf-core-bot @nickhsmith