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Support partial parsing #800

Merged
merged 19 commits into from
Feb 19, 2024
Merged

Support partial parsing #800

merged 19 commits into from
Feb 19, 2024

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dwreeves
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@dwreeves dwreeves commented Jan 15, 2024

Description

dbt uses partial_parse.msgpack to make rendering things a lot faster. This PR adds support for partial_parse.msgpack in the following places:

  • ExecutionMode.LOCAL
  • ExecutionMode.VIRTUALENV
  • LoadMode.DBT_LS

This PR also allows users to explicitly turn off partial parsing. If this is done, then --no-partial-parse will be passed as an explicit flag in all dbt command invocations (i.e. all ExecutionModes and LoadMode.DBT_LS, albeit not the dbt deps invocation.)

This should address some performance complaints that users have, e.g. this message from Slack: https://apache-airflow.slack.com/archives/C059CC42E9W/p1704483361206829 Albeit, this user will also need to provide a partial_parse.msgpack.

My experimentation and looking at dbt-core source code confirms that dbt does not use manifest.json when partial parsing. It appears that these are just output artifacts, but not input artifacts. Only partial_parse.msgpack is used. (There are a couple ways to confirm this other than just checking source code

Also, I added a minor refactor of a feature I added a year ago: I added send_sigint() to the custom subprocess hook, since this custom subprocess hook did not exist back when I added it (if you want me to split this refactor into a different PR then let me know).

API change

I decided the best way to go about this would be to just add a partial_parse: bool to both the execution config and render config. For example:

dbt_group = DbtTaskGroup(
    ...,
    execution_config=ExecutionConfig(
        ...,
        partial_parse=True
    ),
    render_config=RenderConfig(
        ...,
        partial_parse=False
    )
)

That said, in all honesty users will not need to set this at all, except unless they want to suppress the little warning message about not being able to find the partial_parse.msgpack. This is because by default this addition searches for a msgpack if it exists, which is already the existing behavior in a sense, except right now the msgpack file never exists (dbt does look for it though).

When inserting into the AbstractDbtBaseOperator, I did not use global_boolean_flags. See the subsection below for why.

Other execution performance improvements

The main reason I am adding this feature is that it should dramatically improve performance for users. However, it is not the only way to improve

It's possible that we should add a way to add the flag --no-write-json as an explicit kwarg to the dbt base operator. Right now users can support this via dbt_cmd_global_flags=["--no-write-json"]. Some users (e.g. those using Elementary, or those using the dbt local operator callback kwarg) will want to write the JSON, but I suspect the majority of users will not. Similarly, --log-level-file is not used at all, and at minimum dbt should work best the vast majority of time with --no-cache-selected-only set.

It's also possible there should be some sort of "performant" mode that automatically sets all these defaults for optimal performance:

  • --no-write-json
  • --log-level-file=none
  • --no-cache-selected-only

Perhaps a "performant" config would be too cumbersome to implement (I would agree with that). In which case the docs could also have a section on performance tips.

A note on global_boolean_flags

I did not add the partial parse support to global_boolean_flags because it doesn't quite fit into the existing paradigm for this. Right now the default for each of these global_boolean_flags is False, whereas the default for partial parse is actually True. This makes fitting it in awkward.

I think it's possible that just having a tuple[str] is insufficient here, as some flags you may want to add (not just --no-partial-parse but also --no-write-json are by default True and must be explicitly turned off. Meaning that the parsing Cosmos does with flags of '--{flag.replace("_", "-")}' is ineffective for flags like this.

Right now, we have an example of putting no in front with no_version_check. Meaning that the default behavior of version checking is True, but the flag itself starts as negated so the default is actually False.

My proposal is, instead of global_boolean_flags: tuple[str], this should instead be global_boolean_flags: tuple[str | tuple[str, str | None, str | None]]. In the case that a global flag is a tuple[str, str | None, str | None], then the first arg should be the flag, the second should be "if true," and the third should be "if false." None indicates, when true/false (respectively), then do nothing.

For example:

class AbstractDbtBaseOperator(BaseOperator, metaclass=ABCMeta):
    ...
    global_boolean_flags = (
        ("no_version_check", "--no-version-check", None),
        ("cache_selected_only", "-cache-selected-only", None),
        ("partial_parse", None, "--no-partial-parse"),
    )

And Cosmos want to support str parsing for backwards compatibility. It's pretty straightforward to convert the data type:

if isinstance(flag, str):
    flag = (flag, '--{flag.replace("_", "-")}', None)

Related Issue(s)

Breaking Change?

Should not break anything. This doesn't do anything when partial_parse.msgpack is missing, and the default behavior (partial_parse=True) does not alter the dbt cmd flags.

Checklist

  • I have made corresponding changes to the documentation (if required)
  • I have added tests that prove my fix is effective or that my feature works

@dwreeves dwreeves requested review from a team as code owners January 15, 2024 18:46
@dosubot dosubot bot added the size:L This PR changes 100-499 lines, ignoring generated files. label Jan 15, 2024
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@dosubot dosubot bot added area:parsing Related to parsing DAG/DBT improvement, issues, or fixes dbt:parse Primarily related to dbt parse command or functionality execution:local Related to Local execution environment parsing:custom Related to custom parsing, like custom DAG parsing, custom DBT parsing, etc labels Jan 15, 2024
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Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (9af7067) 94.72% compared to head (a9e9412) 95.07%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #800      +/-   ##
==========================================
+ Coverage   94.72%   95.07%   +0.35%     
==========================================
  Files          56       56              
  Lines        2520     2540      +20     
==========================================
+ Hits         2387     2415      +28     
+ Misses        133      125       -8     

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dwreeves commented Jan 18, 2024

I don't know how the coverage thing works and if it is checking for 100% coverage of new commits vs just making sure the coverage goes up, but I helped increase the coverage of the code by adding tests for the subprocess hook.

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This is awesome for two reasons: the change in and of itself, and the writeup on where we should look in the future. Apologies it's taken longer to review, but I'm going to check this out today.

I agree the performant mode is nice in theory but may be difficult to maintain. Maybe we should create a docs page specifically on performance with our recommendations? Inclusive of this flag, using the manifest parsing method, install LibYAML, etc. That way, for users who care about performance, there's a single doc for all optimization recommendations.

Quick question re: how this partial parsing plays out in practice. My assumption is that a user would:

  • run dbt parse locally / in CICD (pre-deploying), which generates the necessary artifacts
  • push the entire project to the Airflow deployment
  • set the partial_parse flag

Does that sound right?

@dwreeves
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dwreeves commented Feb 1, 2024

  1. run dbt parse locally / in CICD (pre-deploying), which generates the necessary artifacts

Yes or dbt compile. Both of these commands will produce a manifest.json and partial_parse.msgpack. (A note: This code addition only uses partial_parse.msgpack; however a user making use of pre-compilation for performance reasons would also probably want to use manifest.json as a load method similarly for performance reasons. So two birds with one stone.)

  1. push the entire project to the Airflow deployment
  2. set the partial_parse flag

By default, partial_parse is True. They wouldn't need to explicitly set it unless they wanted to.

I made this API decision (i.e. the decision to have default as True) in part because the user already receives the following warning from dbt when they are not using partial parsing:

Unable to do partial parsing because saved manifest not found. Starting full parse.

Meaning that a user who intended on using partial parsing, and one who did not, is already being warned by dbt that they are not; and by default dbt is looking for it. So I think having the default behavior of the operator match the default behavior of dbt is sensible. (Also, the performance implications of checking for the existence of the file, and failing to find it, are negligible, so very low harm in doing so.)

That's a lot of text for a very small API decision, but I think it's really important to get stuff like this right for popular packages. And I do think this is the right call.


I agree the performant mode is nice in theory but may be difficult to maintain. Maybe we should create a docs page specifically on performance with our recommendations? Inclusive of this flag, using the manifest parsing method, install LibYAML, etc. That way, for users who care about performance, there's a single doc for all optimization recommendations.

I do like this approach. I agree that this would be better than a "performant" mode.

@dwreeves
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dwreeves commented Feb 16, 2024

I made updates as per everyone's suggestions. Thanks.

The docs will have to make it clear that it's only used for rendering when dbt_ls is used and execution for local or virtualenv.

A note on the documentation. I am not documenting the behavior for LoadMode.DBT_LS. I think, in most cases, it will be rare for a user to both be using DBT_LS and have a partial_parse.msgpack. This would not be completely unheard of and can be a reasonable deliberate decision if the dbt project mutates a lot, but the partial_parse.msgpack is not being updated frequently, so you either set the load mode deliberately or just forego the manifest.json but keep the partial parse file. But all told this is a pretty niche situation-- I think a lot of users on DBT_LS mode are likely foregoing the use of dbt artifacts altogether. And I wasn't sure where it would fit in without feeling like it was adding clutter and potential confusion to the docs for most users. Let me know if you want to document this regardless, but that was my rationale for not mentioning it.

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Thanks, this is great @dwreeves!

Could you also add the partial_parse arg to the project config docs here: https://github.com/astronomer/astronomer-cosmos/blob/main/docs/configuration/project-config.rst

After that and the minor comment below, it looks good to me to merge.

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@jbandoro Done

@dosubot dosubot bot added the lgtm This PR has been approved by a maintainer label Feb 19, 2024
@jbandoro jbandoro merged commit 39acd4c into astronomer:main Feb 19, 2024
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@tatiana tatiana mentioned this pull request Feb 27, 2024
tatiana added a commit that referenced this pull request Mar 1, 2024
Features

* Add dbt docs natively in Airflow via plugin by @dwreeves in #737
* Add support for ``InvocationMode.DBT_RUNNER`` for local execution mode
by @jbandoro in #850
* Support partial parsing to render DAGs faster when using
``ExecutionMode.LOCAL``, ``ExecutionMode.VIRTUALENV`` and
``LoadMode.DBT_LS`` by @dwreeves in #800
* Add Azure Container Instance as Execution Mode by @danielvdende in
#771
* Add dbt build operators by @dylanharper-qz in #795
* Add dbt profile config variables to mapped profile by @ykuc in #794
* Add more template fields to ``DbtBaseOperator`` by @dwreeves in #786

Bug fixes

* Make ``PostgresUserPasswordProfileMapping`` schema argument optional
by @FouziaTariq in #683
* Fix ``folder_dir`` not showing on logs for ``DbtDocsS3LocalOperator``
by @PrimOox in #856
* Improve ``dbt ls`` parsing resilience to missing tags/config by
@tatiana in #859
* Fix ``operator_args`` modified in place in Airflow converter by
@jbandoro in #835
* Fix Docker and Kubernetes operators execute method resolution by
@jbandoro in #849

Docs

* Fix docs homepage link by @jlaneve in #860
* Fix docs ``ExecutionConfig.dbt_project_path`` by @jbandoro in #847
* Fix typo in MWAA getting started guide by @jlaneve in #846

Others

* Add performance integration tests by @jlaneve in #827
* Add ``connect_retries`` to databricks profile to fix expensive
integration failures by @jbandoro in #826
* Add import sorting (isort) to Cosmos by @jbandoro in #866
* Add Python 3.11 to CI/tests by @tatiana and @jbandoro in #821, #824
and #825
* Fix failing ``test_created_pod`` for
``apache-airflow-providers-cncf-kubernetes`` after v8.0.0 update by
@jbandoro in #854
* Extend ``DatabricksTokenProfileMapping`` test to include session
properties by @tatiana in #858
* Fix broken integration test uncovered from Pytest 8.0 update by
@jbandoro in #845
* Pre-commit hook updates in #834, #843 and #852
tatiana added a commit that referenced this pull request May 1, 2024
…ct (#904)

Improve the performance to run the benchmark DAG with 100 tasks by 34%
and the benchmark DAG with 10 tasks by 22%, by persisting the dbt
partial parse artifact in Airflow nodes. This performance can be even
higher in the case of dbt projects that take more time to be parsed.

With the introduction of #800, Cosmos supports using dbt partial parsing
files. This feature has led to a substantial performance improvement,
particularly for large dbt projects, both during Airflow DAG parsing
(using LoadMode.DBT_LS) and also Airflow task execution (when using
`ExecutionMode.LOCAL` and `ExecutionMode.VIRTUALENV`).

There were two limitations with the initial support to partial parsing,
which the current PR aims to address:

1. DAGs using Cosmos `ProfileMapping` classes could not leverage this
feature. This is because the partial parsing relies on profile files not
changing, and by default, Cosmos would mock the dbt profile in several
parts of the code. The consequence is that users trying Cosmos 1.4.0a1
will see the following message:
```
13:33:16  Unable to do partial parsing because profile has changed
13:33:16  Unable to do partial parsing because env vars used in profiles.yml have changed
```

2. The user had to explicitly provide a `partial_parse.msgpack` file in
the original project folder for their Airflow deployment - and if, for
any reason, this became outdated, the user would not leverage the
partial parsing feature. Since Cosmos runs dbt tasks from within a
temporary directory, the partial parse would be stale for some users, it
would be updated in the temporary directory, but the next time the task
was run, Cosmos/dbt would not leverage the recently updated
`partial_parse.msgpack` file.

The current PR addresses these two issues respectfully by:

1. Allowing users that want to leverage Cosmos `ProfileMapping` and
partial parsing to use `RenderConfig(enable_mock_profile=False)`

2. Introducing a Cosmos cache directory where we are persisting partial
parsing files. This feature is enabled by default, but users can opt out
by setting the Airflow configuration `[cosmos][enable_cache] = False`
(exporting the environment variable `AIRFLOW__COSMOS__ENABLE_CACHE=0`).
Users can also define the temporary directory used to store these files
using the `[cosmos][cache_dir]` Airflow configuration. By default,
Cosmos will create and use a folder `cosmos` inside the system's
temporary directory:
https://docs.python.org/3/library/tempfile.html#tempfile.gettempdir .

This PR affects both DAG parsing and task execution. Although it does
not introduce an optimisation per se, it makes the partial parse feature
implemented #800 available to more users.

Closes: #722

I updated the documentation in the PR: #898

Some future steps related to optimization associated to caching to be
addressed in separate PRs:
i. Change how we create mocked profiles, to create the file itself in
the same way, referencing an environment variable with the same name -
and only changing the value of the environment variable (#924)
ii. Extend caching to the `profiles.yml` created by Cosmos in the newly
introduced `tmp/cosmos` without the need to recreate it every time
(#925).
iii. Extend caching to the Airflow DAG/Task group as a pickle file -
this approach is more generic and would work for every type of DAG
parsing and executor. (#926)
iv. Support persisting/fetching the cache from remote storage so we
don't have to replicate it for every Airflow scheduler and worker node.
(#927)
v. Cache dbt deps lock file/avoid installing dbt steps every time. We
can leverage `package-lock.yml` introduced in dbt t 1.7
(https://docs.getdbt.com/reference/commands/deps#predictable-package-installs),
but ideally, we'd have a strategy to support older versions of dbt as
well. (#930)
vi. Support caching `partial_parse.msgpack` even when vars change:
https://medium.com/@sebastian.daum89/how-to-speed-up-single-dbt-invocations-when-using-changing-dbt-variables-b9d91ce3fb0d
vii. Support partial parsing in Docker and Kubernetes Cosmos executors
(#929)
viii. Centralise all the Airflow-based config into Cosmos settings.py &
create a dedicated docs page containing information about these (#928)

**How to validate this change**

Run the performance benchmark against this and the `main` branch,
checking the value of `/tmp/performance_results.txt`.

Example of commands run locally:

```
# Setup
AIRFLOW_HOME=`pwd` AIRFLOW_CONN_AIRFLOW_DB="postgres://postgres:postgres@0.0.0.0:5432/postgres" PYTHONPATH=`pwd` AIRFLOW_HOME=`pwd` AIRFLOW__CORE__DAGBAG_IMPORT_TIMEOUT=20000 AIRFLOW__CORE__DAG_FILE_PROCESSOR_TIMEOUT=20000 hatch run tests.py3.11-2.7:test-performance-setup

# Run test for 100 dbt models per DAG:
MODEL_COUNT=100 AIRFLOW_HOME=`pwd` AIRFLOW_CONN_AIRFLOW_DB="postgres://postgres:postgres@0.0.0.0:5432/postgres" PYTHONPATH=`pwd` AIRFLOW_HOME=`pwd` AIRFLOW__CORE__DAGBAG_IMPORT_TIMEOUT=20000 AIRFLOW__CORE__DAG_FILE_PROCESSOR_TIMEOUT=20000 hatch run tests.py3.11-2.7:test-performance
```

An example of output when running 100 with the main branch:
```
NUM_MODELS=100
TIME=114.18614888191223
MODELS_PER_SECOND=0.8757629623135543
DBT_VERSION=1.7.13
```

And with the current PR:
```
NUM_MODELS=100
TIME=75.17766404151917
MODELS_PER_SECOND=1.33018232576064
DBT_VERSION=1.7.13
```
tatiana added a commit that referenced this pull request May 1, 2024
Improves docs to highlight the limitation of the parsing parsing
approach (introduced in #800), following up on the feedback on #722 and the changes introduced in #904
@tatiana tatiana mentioned this pull request May 2, 2024
tatiana added a commit that referenced this pull request May 13, 2024
Features

* Add dbt docs natively in Airflow via plugin by @dwreeves in #737
* Add support for ``InvocationMode.DBT_RUNNER`` for local execution mode
by @jbandoro in #850
* Support partial parsing to render DAGs faster when using
``ExecutionMode.LOCAL``, ``ExecutionMode.VIRTUALENV`` and
``LoadMode.DBT_LS`` by @dwreeves in #800
* Improve performance by 22-35% or more by caching partial parse
artefact by @tatiana in #904
* Add Azure Container Instance as Execution Mode by @danielvdende in
#771
* Add dbt build operators by @dylanharper-qz in #795
* Add dbt profile config variables to mapped profile by @ykuc in #794
* Add more template fields to ``DbtBaseOperator`` by @dwreeves in #786
* Add ``pip_install_options`` argument to operators by @octiva in #808

Bug fixes

* Make ``PostgresUserPasswordProfileMapping`` schema argument optional
by @FouziaTariq in #683
* Fix ``folder_dir`` not showing on logs for ``DbtDocsS3LocalOperator``
by @PrimOox in #856
* Improve ``dbt ls`` parsing resilience to missing tags/config by
@tatiana in #859
* Fix ``operator_args`` modified in place in Airflow converter by
@jbandoro in #835
* Fix Docker and Kubernetes operators execute method resolution by
@jbandoro in #849
* Fix ``TrinoBaseProfileMapping`` required parameter for non method
authentication by @AlexandrKhabarov in #921
* Fix global flags for lists by @ms32035 in #863
* Fix ``GoogleCloudServiceAccountDictProfileMapping`` when getting
values from the Airflow connection ``extra__`` keys by @glebkrapivin in
#923
* Fix using the dag as a keyword argument as ``specific_args_keys`` in
DbtTaskGroup by @tboutaour in #916
* Fix ACI integration (``DbtAzureContainerInstanceBaseOperator``) by
@danielvdende in #872
* Fix setting dbt project dir to the tmp dir by @dwreeves in #873
* Fix dbt docs operator to not use ``graph.gpickle`` file when
``--no-write-json`` is passed by @dwreeves in #883
* Make Pydantic a required dependency by @pankajkoti in #939
* Gracefully error if users try to ``emit_datasets`` with ``Airflow
2.9.0`` or ``2.9.1`` by @tatiana in #948
* Fix parsing tests that have no parents in #933 by @jlaneve
* Correct ``root_path`` in partial parse cache by @pankajkoti in #950

Docs

* Fix docs homepage link by @jlaneve in #860
* Fix docs ``ExecutionConfig.dbt_project_path`` by @jbandoro in #847
* Fix typo in MWAA getting started guide by @jlaneve in #846
* Fix typo related to exporting docs to GCS by @tboutaour in #922
* Improve partial parsing docs by @tatiana in #898
* Improve docs for datasets for airflow >= 2.4 by @SiddiqueAhmad in #879
* Improve test behaviour docs to highlight ``warning`` feature in the
``virtualenv`` mode by @mc51 in #910
* Fix docs typo by @SiddiqueAhmad in #917
* Improve Astro docs by @RNHTTR in #951

Others

* Add performance integration tests by @jlaneve in #827
* Enable ``append_env`` in ``operator_args`` by default by @tatiana in
#899
* Change default ``append_env`` behaviour depending on Cosmos
``ExecutionMode`` by @pankajkoti and @pankajastro in #954
* Expose the ``dbt`` graph in the ``DbtToAirflowConverter`` class by
@tommyjxl in #886
* Improve dbt docs plugin rendering padding by @dwreeves in #876
* Add ``connect_retries`` to databricks profile to fix expensive
integration failures by @jbandoro in #826
* Add import sorting (isort) to Cosmos by @jbandoro in #866
* Add Python 3.11 to CI/tests by @tatiana and @jbandoro in #821, #824
and #825
* Fix failing ``test_created_pod`` for
``apache-airflow-providers-cncf-kubernetes`` after v8.0.0 update by
@jbandoro in #854
* Extend ``DatabricksTokenProfileMapping`` test to include session
properties by @tatiana in #858
* Fix broken integration test uncovered from Pytest 8.0 update by
@jbandoro in #845
* Add Apache Airflow 2.9 to the test matrix by @tatiana in #940
* Replace deprecated ``DummyOperator`` by ``EmptyOperator`` if Airflow
>=2.4.0 by @tatiana in #900
* Improve logs to troubleshoot issue in 1.4.0a2 with astro-cli by
@tatiana in #947
* Fix issue when publishing a new release to PyPI by @tatiana in #946
* Pre-commit hook updates in #820, #834, #843 and #852, #890, #896,
#901, #905, #908, #919, #931, #941
tatiana added a commit that referenced this pull request May 15, 2024
[Daniel Reeves](https://www.linkedin.com/in/daniel-reeves-27700545/)
(@dwreeves ) is an experienced Open-Source Developer currently working
as a Data Architect at Battery Ventures. He has significant experience
with Apache Airflow, SQL, and Python and has contributed to many [OSS
projects](https://github.com/dwreeve).

Not only has he been using Cosmos since its early stages, but since
January 2023, he has actively contributed to the project:
![Screenshot 2024-05-14 at 10 47
30](https://github.com/astronomer/astronomer-cosmos/assets/272048/57829cb6-7eee-4b02-998b-46cc7746f15a)

He has been a critical driver for the Cosmos 1.4 release, and some of
his contributions include new features, bug fixes, and documentation
improvements, including:
* Creation of an Airflow plugin to render dbt docs:
#737
* Support using dbt partial parsing file:
#800
* Add more template fields to `DbtBaseOperator`:
#786
* Add cancel on kill functionality:
#101
* Make region optional in Snowflake profile mapping:
#100
* Fix the dbt docs operator to not look for `graph.pickle`:
#883

He thinks about the project long-term and proposes thorough solutions to
problems faced by the community, as can be seen in Github tickets:
* Introducing composability in the middle layer of Cosmos's API:
#895
* Establish a general pattern for uploading artifacts to storage:
#894
* Support `operator_arguments` injection at a node level:
#881

One of Daniel's notable traits is his collaborative and supportive
approach. He has actively engaged with users in the #airflow-dbt Slack
channel, demonstrating his commitment to fostering a supportive
community.

We want to promote him as a Cosmos committer and maintainer for all
these, recognising his constant efforts and achievements towards our
community. Thank you very much, @dwreeves !
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