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@atgenomix

ATGENOMIX

Cloud-native biomedical informatics platform

Popular repositories

  1. deepvariant-on-spark deepvariant-on-spark Public

    DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

    Shell 12 5

  2. graphseq graphseq Public

    String Graph Construction on Spark

    Python 3

  3. deepvariant deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python 1 1

  4. hail hail Public

    Forked from hail-is/hail

    Scalable genomic data analysis.

    Scala 1

  5. connectedreads connectedreads Public

    a machine-learning optimized long-range genome analysis workflow for next-generation sequencing

    Scala 1

  6. cromwell cromwell Public archive

    Forked from broadinstitute/cromwell

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala

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