Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
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.github add issue template so people can be directed to the forums naturally (#… Jun 14, 2018
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CromIAM/src CromIAM timeout matches Cromwell (#4615) Feb 6, 2019
backend /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
centaur Increase the amount of memory for long_cmd especially for PapiV2. Feb 19, 2019
centaurCwlRunner/src Bump libraries and run centaur bcs. Jan 29, 2019
cloud-nio Bump libraries and run centaur bcs. Jan 29, 2019
cloudSupport/src Bump libraries and run centaur bcs. Jan 29, 2019
common/src DRS filesystem: Read contents support (#4531) Jan 10, 2019
core/src /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
cromwellApiClient/src Perf reporting (#4123) Sep 24, 2018
cwl/src /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
cwlEncoder/src/main/scala/cwl/encoder Changed circe codecs from auto to semi-auto. Oct 23, 2018
database /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
docker move cromwell Feb 25, 2018
dockerHashing/src Bump libraries and run centaur bcs. Jan 29, 2019
docs Fix AWS cron links. Feb 15, 2019
engine/src /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
filesystems Bump libraries and run centaur bcs. Jan 29, 2019
languageFactories /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
perf/src/main Changed circe codecs from auto to semi-auto. Oct 23, 2018
project Publish only the `-SNAP` docker tag for snapshot sbt dockerBuildAndPu… Feb 20, 2019
release changed github clones back to ssh; changed jar paths Oct 17, 2018
scripts Bump libraries and run centaur bcs. Jan 29, 2019
server/src /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
services/src /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
src/ci Fix AWS cron links. Feb 15, 2019
supportedBackends Bump libraries and run centaur bcs. Jan 29, 2019
wdl /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
wes2cromwell/src/main Implement the WES service-info endpoint (#4455) Dec 6, 2018
wom/src
womtool /describe: workflow name, inputs/outputs, tool descriptor (#4571) Feb 14, 2019
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.gitignore Bump libraries and run centaur bcs. Jan 29, 2019
.sbtopts Don't request more mem than most IntelliJ's need for sbt-import. Dec 11, 2018
.travis.yml Revert: Temporary patch: Use an encrypted variable for the vault token. Jan 25, 2019
AUTHORS move cromwell Feb 25, 2018
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README.md Move references for Travis-CI from .org to .com Jan 16, 2019
build.sbt DRS filesystem: Read contents support (#4531) Jan 10, 2019
codecov.yml move cromwell Feb 25, 2018
cromwell.examples.conf Allow for a 'name-for-call-caching-purposes' to override the backend … Jan 4, 2019
mkdocs.yml Fix AWS cron links. Feb 15, 2019

README.md

Build Status codecov

Welcome to Cromwell

Cromwell is a Workflow Management System geared towards scientific workflows. Cromwell is open sourced under the BSD 3-Clause license.

The Cromwell documentation has a new home, click here to check it out!

First time to Cromwell? Get started with Tutorials!

Jamie, the Cromwell pig