/cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
  1. Scala 85.1%
  2. Java 7.6%
  3. wdl 6.2%
  4. Other 1.1%
Scala Java wdl Other
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Latest commit 1250ab8 Jan 5, 2018 @cjllanwarne cjllanwarne Merge pull request #3105 from broadinstitute/cjl_initial_work_dir_req… 
…uirement_5

IWDR: Allow any combination of entry/entryname constants and expressions
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.idea/inspectionProfiles move cromwell Nov 1, 2017
backend Allow StringDirect entryname to be an expression Jan 3, 2018
centaur IWDR: Allow any combination of entry/entryname constants and expressions Jan 5, 2018
centaurCwlRunner/src PAPI CWL conformance. Jan 2, 2018
cloudSupport/src Imperfect retries for GCS requests Dec 5, 2017
common/src Make Common 100% again. Dec 4, 2017
core/src Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
cromwellApiClient/src Support array submission with root workflow (#3062) Dec 15, 2017
cwl/src IWDR: Allow any combination of entry/entryname constants and expressions Jan 5, 2018
cwlEncoder/src/main/scala/cwl/encoder separate out cwl encoder into its own package (#3056) Dec 13, 2017
database Support array submission with root workflow (#3062) Dec 15, 2017
docker move cromwell Nov 1, 2017
dockerHashing/src move cromwell Nov 1, 2017
docs SGE clusterconfiguration correction (#3100) Jan 3, 2018
engine/src Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
filesystems/gcs/src Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
project PAPI CWL conformance. Jan 2, 2018
release Release WDL updates Dec 4, 2017
scripts Merge READMEs (#2950) Nov 30, 2017
services/src Support array submission with root workflow (#3062) Dec 15, 2017
src pass with a warning message if secure environment variables are not a… Jan 4, 2018
supportedBackends Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
wdl/src Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
wom/src Use the I/O Actor to execute IoFunctionSet methods (#3091) Jan 3, 2018
womtool [PREGULL] CWL scatter (#3045) Dec 13, 2017
.dockerignore move cromwell Nov 1, 2017
.gitattributes move cromwell Nov 1, 2017
.gitignore move cromwell Nov 1, 2017
.pullapprove.yml Switch pullapprove from users to team(s). Dec 8, 2017
.travis.yml PAPI CWL conformance. Jan 2, 2018
AUTHORS move cromwell Nov 1, 2017
CHANGELOG.md Doc updates pre-30 release, closes #2888 (#2982) Dec 4, 2017
LICENSE-ASL-2.0 move cromwell Nov 1, 2017
LICENSE.txt move cromwell Nov 1, 2017
README.md Doc updates pre-30 release, closes #2888 (#2982) Dec 4, 2017
Running move cromwell Nov 1, 2017
build.sbt PAPI CWL conformance. Jan 2, 2018
codecov.yml move cromwell Nov 1, 2017
cromwell.examples.conf move cromwell Nov 1, 2017
mkdocs.yml Doc updates pre-30 release, closes #2888 (#2982) Dec 4, 2017

README.md

Build Status codecov

Welcome to Cromwell

Cromwell is a Workflow Management System geared towards scientific workflows. Cromwell is open sourced under the BSD 3-Clause license.

The Cromwell documentation has a new home, click here to check it out!

First time to Cromwell? Get started with Tutorials!

Jamie, the Cromwell pig