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Playmol is a(nother) software for building molecular models
ATOMS Web Site
AtomsMM is an OpenMM customization for the ATOMS group at UFRJ/Brazil
Shared Libraries for AtomsMM
A tool for performing post-processing of lammps log files
Example Scripts using AtomsMM
EmDee: A Molecular Dynamics Laboratory
Some useful shell scripts for academic writing and programming
OpenMM is a toolkit for molecular simulation using high performance GPU code.
Thermophysical properties for the masses
A LAMMPS user package for alchemical free-energy calculations
A LAMMPS user package developed at ATOMS/UFRJ
A new LAMMPS fix style designed for Hybrid Monte Carlo simulations
A Neighbor List Handler for Molecular Simulation
EmDee.jl: A Molecular Dynamics Laboratory
The Julia Language: A fresh approach to technical computing.
A Fortran module for the definition and GPU-based evaluation of Matrix/Vector operations