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Fixed issue when running aws cli v2 on minimal docker instances (erro… #128

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merged 3 commits into from Feb 10, 2021

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kgalens
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@kgalens kgalens commented Feb 9, 2021

…r: missing libz.so.1). Note: aws help broken (due to missing 'groff')

By default, the aws cli zip package contains the shared object files (.so) in the distribution folder. Setting LD_LIBRARY_PATH to this dist directory will allow the aws cli to run on instances without this shared library. Tested on a minimal biocontainer instance.

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…r: missing libz.so.1). Note: aws help broken (due to missing 'groff')
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Needs an extra change to support Nextflow

src/ecs-additions/fetch_and_run.sh Show resolved Hide resolved
src/containers/nextflow/nextflow.aws.sh Outdated Show resolved Hide resolved
remove `env.LD_LIBRARY_PATH` CONFIG
@wleepang wleepang merged commit 9c73fad into aws-samples:master Feb 10, 2021
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