fix: change output file type

.gitignore

@@ -6,7 +6,7 @@
 # Ignore any zip files
 *.zip
 
-Info_Output.yml
+Info_Output.log
 dist
 .build
 .idea

INSTALL.md

@@ -131,11 +131,11 @@ You can also use their abbreviations:
 docker run -it -l install-container fhir-server-install -r <REGION> -s <STAGE>
 ```
 
-If you would like to retrieve `Info_Output.yml` file from the container, use the following commands:
+If you would like to retrieve `Info_Output.log` file from the container, use the following commands:
 
 ```sh
 container_id=$(docker ps -f "label=install-container" --format "{{.ID}}")
-docker cp ${container_id}:/home/node/fhir-works-on-aws-deployment/Info_Output.yml .
+docker cp ${container_id}:/home/node/fhir-works-on-aws-deployment/Info_Output.log .
 ```
 
 To remove container:
@@ -353,7 +353,7 @@ and execute the following command:
 ACCESS_KEY=<ACCESS_KEY> SECRET_KEY=<SECRET_KEY> ES_DOMAIN_ENDPOINT=<ES_DOMAIN_ENDPOINT> node elasticsearch-operations.js <REGION> "<function to execute>" "<optional additional params>"
 ```
 
-These parameters can be found by checking the `INFO_OUTPUT.yml` file generated by the installation script, or by running the previously mentioned `serverless info --verbose` command.
+These parameters can be found by checking the `Info_Output.log` file generated by the installation script, or by running the previously mentioned `serverless info --verbose` command.
 
 ### Optional installation configurations
 
@@ -365,7 +365,7 @@ Accessing the Kibana server requires you to set up a Cognito user. The installat
 
 The installation script will print the URL to the Kibana server after setup completes. Navigate to this URL and enter your login credentials to access the Kibana server.
 
-If you lose this URL, it can be found in the `INFO_OUTPUT.yml` file under the "ElasticsearchDomainKibanaEndpoint" entry.
+If you lose this URL, it can be found in the `Info_Output.log` file under the "ElasticsearchDomainKibanaEndpoint" entry.
 
 ##### Accessing Elasticsearch Kibana server
 

README.md

@@ -63,7 +63,7 @@ This project is licensed under the Apache-2.0 license.
 
 ### Retrieving user variables
 
-After installation, all user-specific variables (such as `USER_POOL_APP_CLIENT_ID`) can be found in the `INFO_OUTPUT.yml` file. You can also retrieve these values by running the following command:
+After installation, all user-specific variables (such as `USER_POOL_APP_CLIENT_ID`) can be found in the `Info_Output.log` file. You can also retrieve these values by running the following command:
 ```
 serverless info --verbose --region <REGION> --stage <STAGE>. 
 ```
@@ -101,7 +101,7 @@ Set up the following three environment variables:
 
 For instructions on importing the environment JSON, click [here](https://thinkster.io/tutorials/testing-backend-apis-with-postman/managing-environments-in-postman).
 
-The following variables required in the Postman collection can be found in `Info_Output.yml` or by running `serverless info --verbose`:
+The following variables required in the Postman collection can be found in `Info_Output.log` or by running `serverless info --verbose`:
 + API_URL: from Service Information:endpoints: ANY
 + API_KEY: from Service Information: api keys: developer-key
 + CLIENT_ID: from Stack Outputs: UserPoolAppClientId
@@ -138,7 +138,7 @@ To access the FHIR API, an access token is required. This can be obtained by fol
 
 **Retrieving an access token using aws.cognito.signin.user.admin**
 
-A Cognito OAuth access token can be obtained using the following command substituting all variables with their values from `INFO_OUTPUT.yml` or by using the `serverless info --verbose` command.
+A Cognito OAuth access token can be obtained using the following command substituting all variables with their values from `Info_Output.log` or by using the `serverless info --verbose` command.
 +	For Windows, enter:
 ```sh
 scripts/init-auth.py <CLIENT_ID> <REGION>

scripts/install.sh

@@ -102,9 +102,9 @@ function install_dependencies(){
     return 0
 }
 
-#Function to parse YAML files
-##Usage: eval $(parse_yaml <FILE_PATH> <PREFIX>)
-##Output: adds variables from YAML file to namespace of script
+#Function to parse log files
+##Usage: eval $(parse_log <FILE_PATH> <PREFIX>)
+##Output: adds variables from log file to namespace of script
 ##          variable names are prefixed with <PREFIX>, if supplied
 ##          sublists are marked with _
 ##
@@ -115,7 +115,7 @@ function install_dependencies(){
 ##Example Output:
 ##          testLeve1_testLevel2=3
 ##
-function parse_yaml() {
+function parse_log() {
    local prefix=$2
    local s='[[:space:]]*' w='[a-zA-Z0-9_]*' fs=$(echo @|tr @ '\034')
    sed -ne "s|^\($s\):|\1|" \
@@ -237,11 +237,11 @@ if $already_deployed; then
         echo -e "\nOkay, let's redeploy the server.\n"
     else
         if ! $fail; then
-            eval $( parse_yaml Info_Output.yml )
+            eval $( parse_log Info_Output.log )
             echo -e "\n\nSetup completed successfully."
             echo -e "You can now access the FHIR APIs directly or through a service like POSTMAN.\n\n"
             echo "For more information on setting up POSTMAN, please see the README file."
-            echo -e "All user details were stored in 'Info_Output.yml'.\n"
+            echo -e "All user details were stored in 'Info_Output.log'.\n"
             echo -e "You can obtain new Cognito authorization tokens by using the init-auth.py script.\n"
             echo "Syntax: "
             echo "AWS_ACCESS_KEY_ID=<ACCESS_KEY> AWS_SECRET_ACCESS_KEY=<SECRET-KEY> python3 scripts/init-auth.py <USER_POOL_APP_CLIENT_ID> <REGION>"
@@ -299,15 +299,15 @@ echo -e "\n\nFHIR Works is deploying. A fresh install will take ~20 mins\n\n"
 ## Deploy to stated region
 yarn run serverless deploy --region $region --stage $stage || { echo >&2 "Failed to deploy serverless application."; exit 1; }
 
-## Output to console and to file Info_Output.yml.  tee not used as it removes the output highlighting.
+## Output to console and to file Info_Output.log.  tee not used as it removes the output highlighting.
 echo -e "Deployed Successfully.\n"
-touch Info_Output.yml
-SLS_DEPRECATION_DISABLE=* yarn run serverless info --verbose --region $region --stage $stage && SLS_DEPRECATION_DISABLE=* yarn run serverless info --verbose --region $region --stage $stage > Info_Output.yml
+touch Info_Output.log
+SLS_DEPRECATION_DISABLE=* yarn run serverless info --verbose --region $region --stage $stage && SLS_DEPRECATION_DISABLE=* yarn run serverless info --verbose --region $region --stage $stage > Info_Output.log
 #The double call to serverless info was a bugfix from Steven Johnston
     #(may not be needed)
 
-#Read in variables from Info_Output.yml
-eval $( parse_yaml Info_Output.yml )
+#Read in variables from Info_Output.log
+eval $( parse_log Info_Output.log )
 
 
 ## Cognito Init
@@ -350,7 +350,7 @@ if [ $stage == 'dev' ]; then
             echo -e "\nSuccess: Created a cognito user.\n\n \
                     You can now log into the Kibana server using the email address you provided (username) and your temporary password.\n \
                     You may have to verify your email address before logging in.\n \
-                    The URL for the Kibana server can be found in ./Info_Output.yml in the 'ElasticSearchDomainKibanaEndpoint' entry.\n\n \
+                    The URL for the Kibana server can be found in ./Info_Output.log in the 'ElasticSearchDomainKibanaEndpoint' entry.\n\n \
                     This URL will also be copied below:\n \
                     $ElasticSearchDomainKibanaEndpoint"
             break
@@ -399,7 +399,7 @@ fi
 echo -e "\n\nSetup completed successfully."
 echo -e "You can now access the FHIR APIs directly or through a service like POSTMAN.\n\n"
 echo "For more information on setting up POSTMAN, please see the README file."
-echo -e "All user details were stored in 'Info_Output.yml'.\n"
+echo -e "All user details were stored in 'Info_Output.log'.\n"
 echo -e "You can obtain new Cognito authorization tokens by using the init-auth.py script.\n"
 echo "Syntax: "
 echo "python3 scripts/init-auth.py <USER_POOL_APP_CLIENT_ID> <REGION>"

scripts/win_install.ps1

@@ -95,14 +95,14 @@ function Install-Dependencies {
     return
 }
 
-#Function to get a value from YAML files
-## Usage: GetFrom-Yaml "AttributeName"
-##        GetFrom-Yaml "UserClientId"
-## Output: value stored in YAML
-## Note: This function only reads single lines of YAML files
-function GetFrom-Yaml {
+#Function to get a value from Log files
+## Usage: GetFrom-Log "AttributeName"
+##        GetFrom-Log "UserClientId"
+## Output: value stored in Info_Output.log
+## Note: This function only reads single lines of log files
+function GetFrom-Log {
     Param($valName)
-    gc Info_Output.yml | % { if($_ -match "^[`t` ]*$valName") {Return $_.split(": ")[-1]}}
+    gc Info_Output.log | % { if($_ -match "^[`t` ]*$valName") {Return $_.split(": ")[-1]}}
 }
 
 function Get-ValidPassword {
@@ -274,16 +274,16 @@ if (-Not ($?) ) {
 }
 Write-Host "Deployed Successfully.`n"
 
-rm Info_Output.yml
-fc >> Info_Output.yml
-yarn run serverless info --verbose --region $region --stage $stage | Out-File -FilePath .\Info_Output.yml
+rm Info_Output.log
+fc >> Info_Output.log
+yarn run serverless info --verbose --region $region --stage $stage | Out-File -FilePath .\Info_Output.log
 
-#Read in variables from Info_Output.yml
-$UserPoolId = GetFrom-Yaml "UserPoolId"
-$UserPoolAppClientId = GetFrom-Yaml "UserPoolAppClientId"
-$region = GetFrom-Yaml "Region"
-$ElasticSearchKibanaUserPoolAppClientId = GetFrom-Yaml "ElasticSearchKibanaUserPoolAppClientId"
-$ElasticSearchDomainKibanaEndpoint = GetFrom-Yaml "ElasticSearchDomainKibanaEndpoint"
+#Read in variables from Info_Output.log
+$UserPoolId = GetFrom-Log "UserPoolId"
+$UserPoolAppClientId = GetFrom-Log "UserPoolAppClientId"
+$region = GetFrom-Log "Region"
+$ElasticSearchKibanaUserPoolAppClientId = GetFrom-Log "ElasticSearchKibanaUserPoolAppClientId"
+$ElasticSearchDomainKibanaEndpoint = GetFrom-Log "ElasticSearchDomainKibanaEndpoint"
 
 #refresh environment variables without exiting script
 Refresh-Environment
@@ -352,7 +352,7 @@ if ($stage -eq "dev"){
                 Write-Host "`nSuccess: Created a cognito user.`n`n \
                 You can now log into the Kibana server using the email address you provided (username) and your temporary password.`n \
                 You may have to verify your email address before logging in.`n \
-                The URL for the Kibana server can be found in ./Info_Output.yml in the 'ElasticSearchDomainKibanaEndpoint' entry.`n`n \
+                The URL for the Kibana server can be found in ./Info_Output.log in the 'ElasticSearchDomainKibanaEndpoint' entry.`n`n \
                 This URL will also be copied below:`n \
                 https:$ElasticSearchDomainKibanaEndpoint"
             }
@@ -417,7 +417,7 @@ for(;;) {
 Write-Host "`n`nSetup completed successfully."
 Write-Host "You can now access the FHIR APIs directly or through a service like POSTMAN.`n`n"
 Write-Host "For more information on setting up POSTMAN, please see the README file."
-Write-Host "All user details were stored in 'Info_Output.yml'.`n"
+Write-Host "All user details were stored in 'Info_Output.log'.`n"
 Write-Host "You can obtain new Cognito authorization tokens by using the init-auth.py script.`n"
 Write-Host "Syntax: "
 Write-Host "python3 scripts/init-auth.py <USER_POOL_APP_CLIENT_ID> <REGION>"