Update latest medplum

.github/workflows/build-agent.yml

@@ -0,0 +1,114 @@
+name: Build agent
+
+concurrency:
+  group: ci-build-agent-${{ github.sha }}
+  cancel-in-progress: true
+
+on: workflow_dispatch
+
+jobs:
+  build_agent_win64:
+    runs-on: windows-latest
+    timeout-minutes: 45
+    env:
+      NODE_VERSION: '18'
+      TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}
+      TURBO_TEAM: ${{ secrets.TURBO_TEAM }}
+      TURBO_REMOTE_ONLY: ${{ secrets.TURBO_REMOTE_ONLY }}
+    permissions:
+      actions: read
+      contents: write
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Install NSIS
+        run: choco install nsis
+
+      - name: Install Wget
+        run: choco install wget
+
+      - name: Setup Node.js
+        uses: actions/setup-node@v4
+        with:
+          node-version: 18
+          registry-url: 'https://registry.npmjs.org'
+
+      - name: Install dependencies
+        run: npm ci --maxsockets 1
+
+      - name: Build
+        run: npm run build -- --filter=@medplum/agent
+
+      - name: Build Agent installer
+        shell: bash
+        run: ./scripts/build-agent-installer-win64.sh
+        env:
+          SKIP_SIGNING: 1
+
+      - name: Set Medplum version
+        shell: bash
+        run: |
+          set -e
+          echo "MEDPLUM_VERSION=$(node -p "require('./package.json').version")" >> $GITHUB_ENV
+
+      - name: Upload agent installer
+        uses: actions/upload-artifact@v4
+        with:
+          name: medplum-agent-installer-${{ env.MEDPLUM_VERSION }}-windows
+          path: packages/agent/medplum-agent-installer-*
+
+  build_agent_linux:
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    env:
+      NODE_VERSION: '18'
+      TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}
+      TURBO_TEAM: ${{ secrets.TURBO_TEAM }}
+      TURBO_REMOTE_ONLY: ${{ secrets.TURBO_REMOTE_ONLY }}
+    permissions:
+      actions: read
+      contents: write
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Setup Node.js
+        uses: actions/setup-node@v4
+        with:
+          node-version: 18
+          registry-url: 'https://registry.npmjs.org'
+
+      - name: Install dependencies
+        run: npm ci --maxsockets 1
+
+      - name: Build
+        run: npm run build -- --filter=@medplum/agent
+
+      - name: Build Agent
+        shell: bash
+        run: ./scripts/build-agent-installer-linux.sh
+
+      - name: Set Medplum version
+        shell: bash
+        run: |
+          set -e
+          echo "MEDPLUM_VERSION=$(node -p "require('./package.json').version")" >> $GITHUB_ENV
+
+      - name: Make tarball
+        shell: bash
+        run: |
+          set -e
+
+          mkdir medplum-agent-$MEDPLUM_VERSION-linux
+
+          cp packages/agent/medplum-agent-$MEDPLUM_VERSION-linux ./medplum-agent-$MEDPLUM_VERSION-linux
+          cp packages/agent/medplum-agent-$MEDPLUM_VERSION-linux.sha256 ./medplum-agent-$MEDPLUM_VERSION-linux
+
+          tar -czvf ./medplum-agent-$MEDPLUM_VERSION-linux.tar.gz ./medplum-agent-$MEDPLUM_VERSION-linux
+
+      - name: Upload agent installer
+        uses: actions/upload-artifact@v4
+        with:
+          name: medplum-agent-${{ env.MEDPLUM_VERSION }}-linux
+          path: medplum-agent-${{ env.MEDPLUM_VERSION }}-linux.tar.gz

.github/workflows/build.yml

@@ -15,6 +15,7 @@ jobs:
   build:
     name: Build
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     permissions:
       pull-requests: write
     strategy:
@@ -72,6 +73,7 @@ jobs:
   eslint:
     name: Run eslint
     runs-on: ubuntu-latest
+    timeout-minutes: 20
     needs: [build]
     env:
       SECRETS_TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}
@@ -117,7 +119,7 @@ jobs:
         id: fmt
         run: |
           rm -f .failed
-          NODE_OPTIONS='--max-old-space-size=8192' npm run lint 2> eslint.err > eslint1.err || echo 'failed' > .failed 
+          npm run lint 2> eslint.err > eslint1.err || echo 'failed' > .failed 
 
           if [ -s .failed ]; then
             delimiter="$(openssl rand -hex 8)"
@@ -149,6 +151,7 @@ jobs:
   test:
     name: Run tests
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     needs: [build]
     strategy:
       matrix:
@@ -174,7 +177,7 @@ jobs:
           --health-timeout 5s
           --health-retries 5
         ports:
-          - 5432/tcp
+          - 5432:5432
       redis:
         image: redis:${{ matrix.redis-version }}
         options: >-
@@ -221,7 +224,7 @@ jobs:
         run: ./scripts/test.sh
         env:
           POSTGRES_HOST: localhost
-          POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }}
+          POSTGRES_PORT: 5432
           REDIS_PASSWORD_DISABLED_IN_TESTS: 1
       - name: Upload code coverage
         if: ${{ matrix.node-version == 20 && matrix.pg-version == 14 && matrix.redis-version == 7 }}
@@ -233,6 +236,7 @@ jobs:
   build-docs:
     name: Build the docs
     runs-on: ubuntu-latest
+    timeout-minutes: 30
     permissions:
       pull-requests: write
     env:

.github/workflows/chromatic.yml

@@ -5,6 +5,7 @@ on: push
 jobs:
   chromatic:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - name: Checkout code
         uses: actions/checkout@v4

.github/workflows/deploy.yml

@@ -9,6 +9,7 @@ jobs:
   build:
     name: Deploy
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     if: github.repository == 'medplum/medplum'
     env:
       NODE_VERSION: '20'

.github/workflows/prepare-release.yml

@@ -11,6 +11,7 @@ jobs:
   prepare-release:
     name: Prepare release
     runs-on: ubuntu-latest
+    timeout-minutes: 30
     steps:
       - uses: actions/checkout@v4
         with:

.github/workflows/publish.yml

@@ -8,6 +8,7 @@ jobs:
   build_and_check:
     name: publish
     runs-on: ubuntu-latest
+    timeout-minutes: 30
     env:
       NODE_VERSION: '20'
       SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}
@@ -93,8 +94,9 @@ jobs:
 
   build_agent_win64:
     runs-on: windows-latest
+    timeout-minutes: 45
     env:
-      NODE_VERSION: '20'
+      NODE_VERSION: '18'
       TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}
       TURBO_TEAM: ${{ secrets.TURBO_TEAM }}
       TURBO_REMOTE_ONLY: ${{ secrets.TURBO_REMOTE_ONLY }}
@@ -120,7 +122,7 @@ jobs:
       - name: Setup Node.js
         uses: actions/setup-node@v4
         with:
-          node-version: 20
+          node-version: 18
           registry-url: 'https://registry.npmjs.org'
 
       - name: Install dependencies
@@ -168,8 +170,9 @@ jobs:
 
   build_agent_linux:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     env:
-      NODE_VERSION: '20'
+      NODE_VERSION: '18'
       TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}
       TURBO_TEAM: ${{ secrets.TURBO_TEAM }}
       TURBO_REMOTE_ONLY: ${{ secrets.TURBO_REMOTE_ONLY }}
@@ -183,7 +186,7 @@ jobs:
       - name: Setup Node.js
         uses: actions/setup-node@v4
         with:
-          node-version: 20
+          node-version: 18
           registry-url: 'https://registry.npmjs.org'
 
       - name: Install dependencies

.github/workflows/sonar.yml

@@ -7,6 +7,7 @@ jobs:
   sonar:
     name: Sonar
     runs-on: ubuntu-latest
+    timeout-minutes: 30
     if: github.event.workflow_run.conclusion == 'success'
     steps:
       - uses: actions/checkout@v4

.github/workflows/staging.yml

@@ -10,6 +10,7 @@ jobs:
   build:
     name: Staging
     runs-on: ubuntu-latest
+    timeout-minutes: 30
     env:
       NODE_VERSION: '20'
       TURBO_TOKEN: ${{ secrets.TURBO_TOKEN }}

.gitignore

@@ -20,6 +20,7 @@ packages/cdk/dist/
 packages/cli/dist/
 packages/core/dist/
 packages/core/docs/
+packages/core/src/sql-on-fhir/test_report.json
 packages/definitions/dist/**/*.js
 packages/definitions/dist/**/*.js.map
 packages/definitions/dist/**/*.d.ts
@@ -28,6 +29,7 @@ packages/examples/dist/
 packages/fhir-router/dist/
 packages/generator/dist/
 packages/generator/output/
+packages/generator/compare.html
 packages/graphiql/dist/
 packages/graphiql/public/
 packages/health-gorilla/dist/

.vscode/settings.json

@@ -20,5 +20,6 @@
   },
   "editor.codeActionsOnSave": {
     "source.fixAll.eslint": "never"
-  }
+  },
+  "vitest.disableWorkspaceWarning": true
 }

README.md

@@ -87,25 +87,26 @@ Here is a list of all the big technologies we use:
 ```sh
 medplum/
 ├── packages
-│   ├── agent        # On-premise agent
-│   ├── app          # Frontend web app
-│   ├── bot-layer    # AWS Lambda Layer for Bots
-│   ├── cdk          # AWS CDK infra as code
-│   ├── cli          # Command line interface
-│   ├── core         # Core shared library
-│   ├── definitions  # Data definitions
-│   ├── docs         # Documentation
-│   ├── examples     # Example code used in documentation
-│   ├── fhir-router  # FHIR URL router
-│   ├── fhirtypes    # FHIR TypeScript definitions
-│   ├── generator    # Code generator utilities
-│   ├── graphiql     # Preconfigured GraphiQL
-│   ├── hl7          # HL7 client and server
-│   ├── mock         # Mock FHIR data for testing
-│   ├── react        # React component library
-│   ├── react-hooks  # React hooks library
-│   └── server       # Backend API server
-└── scripts          # Helper bash scripts
+│   ├── agent           # On-premise agent
+│   ├── app             # Frontend web app
+│   ├── bot-layer       # AWS Lambda Layer for Bots
+│   ├── cdk             # AWS CDK infra as code
+│   ├── cli             # Command line interface
+│   ├── core            # Core shared library
+│   ├── definitions     # Data definitions
+│   ├── docs            # Documentation
+│   ├── examples        # Example code used in documentation
+│   ├── expo-polyfills  # Expo polyfills for MedplumClient compatability
+│   ├── fhir-router     # FHIR URL router
+│   ├── fhirtypes       # FHIR TypeScript definitions
+│   ├── generator       # Code generator utilities
+│   ├── graphiql        # Preconfigured GraphiQL
+│   ├── hl7             # HL7 client and server
+│   ├── mock            # Mock FHIR data for testing
+│   ├── react           # React component library
+│   ├── react-hooks     # React hooks library
+│   └── server          # Backend API server
+└── scripts             # Helper bash scripts
 ```
 
 ## Thanks

docker-compose.yml

@@ -1,4 +1,4 @@
-# This is the docker-compose file to run Medplum's required background serivces
+# This is the docker-compose file to run Medplum's required background services
 # It can be used to quickly run 2 services:
 #   1) The Postgres database
 #   2) The Redis cache