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28 Open 33 Closed
28 Open 33 Closed
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Issues list

[Question] Does the read depth of the raw/iced matrix generated by HiCPro influence FitHiC2 loop calling?
#72 opened May 11, 2024 by Datacond
About HiCPro2FitHiC.py error
#71 opened Apr 6, 2024 by HW-Superior
not enough values to unpack (expected 5, got 1)
#70 opened Mar 13, 2024 by wangzhaohui-001
1
"util" scripts missing from conda install
#69 opened Feb 16, 2024 by vidal-adrien
1
Question about calculation of ExpCC and contactcounts for another loop set
#68 opened Nov 15, 2023 by Datacond
Questions about using .hic as input
#67 opened Jul 29, 2023 by nyuhic
Out of range
#66 opened Apr 11, 2023 by Lucas446
8
fithic "invalid syntax"
#65 opened Apr 11, 2023 by Lucas446
1
Does fithic work on single chromosome inputs?
#64 opened Mar 21, 2023 by Jakob-Zerbs
install problem
#63 opened Oct 14, 2022 by jiangshan529
6
Any example of using .hic file as the input?
#58 opened Jul 25, 2022 by Lattesnow
2
merge_filter reduces significant interactions from 12M to 10k
#57 opened Jul 25, 2022 by pna059
Out of 70041 loci 70041 were discarded with biases not in range [0.5 2]
#56 opened Jul 15, 2022 by nisar-BIGPM
3
Difference between ICE and KR biases. Setting up the bias limits.
#55 opened Jul 15, 2022 by pna059
5
how to prepare my input file?
#53 opened Jun 29, 2022 by shenlinyong
2
Allele chromatin loop
#50 opened Feb 25, 2022 by BenxiaHu
Fragment length is not consistent with fithic resolution (-r) in tests data
#48 opened Sep 6, 2021 by bnjvrjnke
1
sequencing depth for loops
#47 opened Aug 22, 2021 by BenxiaHu
6
fithic crash
#46 opened Aug 5, 2021 by fgualdr
1
HiCKRy.py generated extreme bias value
#45 opened Jul 20, 2021 by QianzhaoJ
1
FitHic crashes
#43 opened Apr 14, 2021 by joachimwolff
1
TypeError: can only concatenate str (not "int") to str
#42 opened Apr 14, 2021 by FatihSarigol
8
HiCKRy.py Key errors
#41 opened Apr 9, 2021 by Jssmith91
8
How to decide the bin size in interaction loops?
#40 opened Mar 3, 2021 by shanwai1234
2
error while running FitHiC
#38 opened Dec 12, 2020 by priyatamapandey
29
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