and so it begins

bactopia · Aug 11, 2023 · c2157fc · c2157fc
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commit c2157fc
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/.github/workflows/all-bactopia-tests.yml b/.github/workflows/all-bactopia-tests.yml
@@ -30,7 +30,7 @@ jobs:
 
       - name: Conda Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
@@ -39,7 +39,7 @@ jobs:
 
       - name: Docker Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\
@@ -48,7 +48,7 @@ jobs:
 
       - name: Singularity Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls modules/local/bactopia | xargs -I {} -P 10 -n 1\

diff --git a/.github/workflows/all-bactopia-tool-tests.yml b/.github/workflows/all-bactopia-tool-tests.yml
@@ -31,7 +31,7 @@ jobs:
 
       - name: Singularity Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls subworkflows/local/ | xargs -I {} -P 20 \
@@ -40,7 +40,7 @@ jobs:
 
       - name: Docker Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           cd ${{ env.BACTOPIA_WORKSPACE }}
           ls subworkflows/local/ | xargs -I {} -P 20 \
@@ -49,7 +49,7 @@ jobs:
 
       - name: Conda Profile
         run: |
-          source /data/storage/bactopia-ci/miniconda3/etc/profile.d/conda.sh
+          source /data/storage/bactopia-ci/mambaforge/etc/profile.d/conda.sh
           conda activate bactopia-ci
           conda clean --all -y
           cd ${{ env.BACTOPIA_WORKSPACE }}