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Use bayeux to access a wide range of samplers #775

Merged
merged 34 commits into from
Mar 29, 2024
Merged

Use bayeux to access a wide range of samplers #775

merged 34 commits into from
Mar 29, 2024

Commits on Feb 4, 2024

  1. use bayeux to access a wide range of samplers

    @GStechschulte
    GStechschulte committed Feb 4, 2024
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  2. use bayeux to access a wide range of samplers

    @GStechschulte
    GStechschulte committed Feb 4, 2024
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Commits on Feb 5, 2024

  1. add notebook links to family table (bambinos#774)

    @GStechschulte
    GStechschulte committed Feb 5, 2024
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  2. access methods programatically

    @GStechschulte
    GStechschulte committed Feb 5, 2024
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Commits on Feb 10, 2024

  1. clean bayeux idata to be consistent with pymc model coords

    @GStechschulte
    GStechschulte committed Feb 10, 2024
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  2. rename alternative sampler args in tests

    @GStechschulte
    GStechschulte committed Feb 10, 2024
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  3. change docstring to reflect bayeux sampler names

    @GStechschulte
    GStechschulte committed Feb 10, 2024
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  4. bayeux dependencies are numpyro/jax/jaxlib/blackjax

    @GStechschulte
    GStechschulte committed Feb 10, 2024
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Commits on Feb 19, 2024

  1. rename idata coords and dims to PyMC model

    @GStechschulte
    GStechschulte committed Feb 19, 2024
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  2. add JAX based sampler dependencies

    @GStechschulte
    GStechschulte committed Feb 19, 2024
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Commits on Mar 1, 2024

  1. Update code of conduct (bambinos#783) 

    * Update code of conduct

* update changelog
    @tomicapretto @GStechschulte
    tomicapretto authored and GStechschulte committed Mar 1, 2024
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  2. [WIP] Fix HSGP predictions (bambinos#780) 

    * Delete all HSGP slices at the same time

* Make interpret consider kwargs in function calls

* Update code of conduct (bambinos#783)

* Update code of conduct

* update changelog

* Update formulae to >=0.5.3

* start a test for the hsgp and 'by'

* update changelog
    @tomicapretto @GStechschulte
    tomicapretto authored and GStechschulte committed Mar 1, 2024
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  3. bayeux 0.1.9 updates

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  4. bump bayeux version

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  5. remove TFP methods, optimizers, and resolve pylint errors

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  6. alternative backends docs

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  7. tests for JAX based samplers except TFP

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  8. add TFP backend example

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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  9. add TFP MCMC methods

    @GStechschulte
    GStechschulte committed Mar 1, 2024
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Commits on Mar 3, 2024

  1. don't use flowmc, chees, meads for categorical model

    @GStechschulte
    GStechschulte committed Mar 3, 2024
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  2. call model.backend.inference_methods to show list of samplers

    @GStechschulte
    GStechschulte committed Mar 3, 2024
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  3. docstring changes

    @GStechschulte
    GStechschulte committed Mar 3, 2024
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  4. inference_methods attribute and change JAX random seed

    @GStechschulte
    GStechschulte committed Mar 3, 2024
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Commits on Mar 4, 2024

  1. Add FutureWarning to inference_method parameter

    @GStechschulte
    GStechschulte committed Mar 4, 2024
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  2. black formatting and resolve pylint errors

    @GStechschulte
    GStechschulte committed Mar 4, 2024
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  3. fix package name

    @GStechschulte
    GStechschulte committed Mar 4, 2024
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Commits on Mar 19, 2024

  1. drop 3.9 and add 3.12 to testing matrix

    @GStechschulte
    GStechschulte committed Mar 19, 2024
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  2. change Python versions in requires-python and target-version

    @GStechschulte
    GStechschulte committed Mar 19, 2024
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  3. remove python 3.11 black target-version

    @GStechschulte
    GStechschulte committed Mar 19, 2024
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  4. pin requires-python to <3.13

    @GStechschulte
    GStechschulte committed Mar 19, 2024
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  5. pip upgrade setuptools

    @GStechschulte
    GStechschulte committed Mar 19, 2024
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Commits on Mar 28, 2024

  1. Bump PyMC to 5.12

    @tomicapretto
    tomicapretto committed Mar 28, 2024
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  2. Upgrade black and pylint

    @tomicapretto
    tomicapretto committed Mar 28, 2024
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Commits on Mar 29, 2024

  1. remove upgrading of setup tools

    @GStechschulte
    GStechschulte committed Mar 29, 2024
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