Fix Linux CI, Remove Mac For Now

.github/workflows/package_and_test.yml

@@ -1,5 +1,4 @@
 name: Build and Test
-
 on:
   workflow_dispatch:
   push:
@@ -8,44 +7,39 @@ on:
     - cron: '0 0 1 * *'
 
 jobs:
-  build-linux:
-    runs-on: ubuntu-latest
-    strategy:
-      max-parallel: 5
-    steps:
-    - uses: actions/checkout@v4
-    - name: Add conda to system path
-      run: |
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
-    - name: Install dependencies
-      run: |
-        conda env update --file environment.yml --name base
-    - name: Build and Install OSTIR
-      run: |
-        python3 setup.py sdist bdist_wheel
-        python3 -m pip install ./
-    - name: Test with unittest
-      run: |
-        python -m unittest
-  build-mac:
-    runs-on: macos-latest
+  create-env:
+    name: ${{ matrix.os }} 
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -l {0}
+
     strategy:
-      max-parallel: 5
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+
     steps:
-    - uses: actions/checkout@v4
-    - name: Add conda to system path
-      run: |
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
-    - name: Install dependencies
-      run: |
-        sudo chown -R $UID $CONDA
-        conda env update --file environment.yml --name base
-    - name: Build and Install OSTIR
-      run: |
-        python3 setup.py sdist bdist_wheel
-        python3 -m pip install ./
-    - name: Test with unittest
-      run: |
-        python -m unittest
+      - name: checkout repository
+        uses: actions/checkout@v3
+
+      - name: create environment with conda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          channels: conda-forge,bioconda,defaults
+          auto-activate-base: false
+          activate-environment: cryptkeeper
+          environment-file: environment.yml
+
+      - name: check solution
+        run: |
+          conda env export
+      - name: install ostir
+        run: |
+          pip install ./
+      
+      - name: test ostir
+        run: |
+          which ostir
+          python -m unittest