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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

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  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…

    C++ 138 21

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 15 4

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 12 7

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 9 4

  5. brefito brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    Python 1

Repositories

Showing 10 of 45 repositories
  • barricklab_calendar Public

    Google Calendar to Slack Daily Events

    barricklab/barricklab_calendar’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 19, 2024
  • brefito Public

    Snakemake pipelines for assembling and annotating bacterial reference sequences

    barricklab/brefito’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 19, 2024
  • LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    barricklab/LTEE-Ecoli’s past year of commit activity
    GAP 15 CC0-1.0 4 1 0 Updated Jul 17, 2024
  • igem2019 Public

    Scripts and datasets for measuring BioBrick plasmid burden.

    barricklab/igem2019’s past year of commit activity
    R 0 0 0 0 Updated Jul 17, 2024
  • cryptkeeper Public

    Tool for visualizing unintentional bacterial gene expression from a DNA sequence

    barricklab/cryptkeeper’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    barricklab/breseq’s past year of commit activity
    C++ 138 GPL-2.0 21 44 1 Updated Jul 10, 2024
  • breseq-ext-cnv Public

    breseq copy number variation extension

    barricklab/breseq-ext-cnv’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Jul 3, 2024
  • ostir Public

    Software for predicting translation initiation rates in bacteria

    barricklab/ostir’s past year of commit activity
    Python 12 GPL-3.0 7 3 (1 issue needs help) 0 Updated May 14, 2024
  • promoter-calculator Public
    barricklab/promoter-calculator’s past year of commit activity
    Python 1 0 0 0 Updated Mar 13, 2024
  • RhoTermPredict Public Forked from MarcoDiSalvo90/RhoTermPredict
    barricklab/RhoTermPredict’s past year of commit activity
    Python 0 AGPL-3.0 11 0 0 Updated Mar 13, 2024
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