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Date format change, Metadata for list results, regenerate javadoc, ad…
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…d connection exception for socket errors,add support for file extension filter
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kingbd committed Sep 28, 2012
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134 changes: 49 additions & 85 deletions javadoc/apidocs/allclasses-frame.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!--NewPage-->
<HTML>
<HEAD>
<!-- Generated by javadoc (build 1.6.0_31) on Tue Sep 11 14:54:09 PDT 2012 -->
<META http-equiv="Content-Type" content="text/html; charset=UTF-8">
<TITLE>
All Classes (BaseSpace Software Development Kit for Java 1.0-SNAPSHOT API)
</TITLE>

<META NAME="date" CONTENT="2012-09-11">

<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">


</HEAD>

<BODY BGCOLOR="white">
<FONT size="+1" CLASS="FrameHeadingFont">
<B>All Classes</B></FONT>
<BR>

<TABLE BORDER="0" WIDTH="100%" SUMMARY="">
<TR>
<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="com/illumina/basespace/AccessDeniedException.html" title="class in com.illumina.basespace" target="classFrame">AccessDeniedException</A>
<BR>
<A HREF="com/illumina/basespace/AppResult.html" title="class in com.illumina.basespace" target="classFrame">AppResult</A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceConfiguration.html" title="interface in com.illumina.basespace" target="classFrame"><I>BaseSpaceConfiguration</I></A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceEntity.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceEntity</A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceSession.html" title="interface in com.illumina.basespace" target="classFrame"><I>BaseSpaceSession</I></A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceSessionManager.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceSessionManager</A>
<BR>
<A HREF="com/illumina/basespace/CoverageMetaData.html" title="class in com.illumina.basespace" target="classFrame">CoverageMetaData</A>
<BR>
<A HREF="com/illumina/basespace/CoverageRecord.html" title="class in com.illumina.basespace" target="classFrame">CoverageRecord</A>
<BR>
<A HREF="com/illumina/basespace/DownloadEvent.html" title="class in com.illumina.basespace" target="classFrame">DownloadEvent</A>
<BR>
<A HREF="com/illumina/basespace/DownloadListener.html" title="interface in com.illumina.basespace" target="classFrame"><I>DownloadListener</I></A>
<BR>
<A HREF="com/illumina/basespace/DownloadProgressListener.html" title="interface in com.illumina.basespace" target="classFrame"><I>DownloadProgressListener</I></A>
<BR>
<A HREF="com/illumina/basespace/ExtendedFileInfo.html" title="class in com.illumina.basespace" target="classFrame">ExtendedFileInfo</A>
<BR>
<A HREF="com/illumina/basespace/FetchParams.html" title="class in com.illumina.basespace" target="classFrame">FetchParams</A>
<BR>
<A HREF="com/illumina/basespace/File.html" title="class in com.illumina.basespace" target="classFrame">File</A>
<BR>
<A HREF="com/illumina/basespace/FileMetaData.html" title="class in com.illumina.basespace" target="classFrame">FileMetaData</A>
<BR>
<A HREF="com/illumina/basespace/ForbiddenResourceException.html" title="class in com.illumina.basespace" target="classFrame">ForbiddenResourceException</A>
<BR>
<A HREF="com/illumina/basespace/Project.html" title="class in com.illumina.basespace" target="classFrame">Project</A>
<BR>
<A HREF="com/illumina/basespace/Response.html" title="class in com.illumina.basespace" target="classFrame">Response</A>
<BR>
<A HREF="com/illumina/basespace/ResponseStatus.html" title="class in com.illumina.basespace" target="classFrame">ResponseStatus</A>
<BR>
<A HREF="com/illumina/basespace/Run.html" title="class in com.illumina.basespace" target="classFrame">Run</A>
<BR>
<A HREF="com/illumina/basespace/Sample.html" title="class in com.illumina.basespace" target="classFrame">Sample</A>
<BR>
<A HREF="com/illumina/basespace/User.html" title="class in com.illumina.basespace" target="classFrame">User</A>
<BR>
<A HREF="com/illumina/basespace/VariantFetchParams.html" title="class in com.illumina.basespace" target="classFrame">VariantFetchParams</A>
<BR>
<A HREF="com/illumina/basespace/VariantFetchParams.ReturnFormat.html" title="enum in com.illumina.basespace" target="classFrame">VariantFetchParams.ReturnFormat</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.AdditionalInfo.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.AdditionalInfo</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.GenotypeInfo.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.GenotypeInfo</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.SampleFormat.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.SampleFormat</A>
<BR>
</FONT></TD>
</TR>
</TABLE>

</BODY>
</HTML>
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_07) on Fri Sep 28 09:20:14 PDT 2012 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>All Classes (BaseSpace Software Development Kit for Java null API)</title>
<meta name="date" content="2012-09-28">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<h1 class="bar">All Classes</h1>
<div class="indexContainer">
<ul>
<li><a href="com/illumina/basespace/AccessDeniedException.html" title="class in com.illumina.basespace" target="classFrame">AccessDeniedException</a></li>
<li><a href="com/illumina/basespace/AppResult.html" title="class in com.illumina.basespace" target="classFrame">AppResult</a></li>
<li><a href="com/illumina/basespace/BaseSpaceConfiguration.html" title="interface in com.illumina.basespace" target="classFrame"><i>BaseSpaceConfiguration</i></a></li>
<li><a href="com/illumina/basespace/BaseSpaceConnectionException.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceConnectionException</a></li>
<li><a href="com/illumina/basespace/BaseSpaceEntity.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceEntity</a></li>
<li><a href="com/illumina/basespace/BaseSpaceException.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceException</a></li>
<li><a href="com/illumina/basespace/BaseSpaceSession.html" title="interface in com.illumina.basespace" target="classFrame"><i>BaseSpaceSession</i></a></li>
<li><a href="com/illumina/basespace/BaseSpaceSessionManager.html" title="class in com.illumina.basespace" target="classFrame">BaseSpaceSessionManager</a></li>
<li><a href="com/illumina/basespace/BasicResponse.html" title="class in com.illumina.basespace" target="classFrame">BasicResponse</a></li>
<li><a href="com/illumina/basespace/CoverageMetaData.html" title="class in com.illumina.basespace" target="classFrame">CoverageMetaData</a></li>
<li><a href="com/illumina/basespace/CoverageRecord.html" title="class in com.illumina.basespace" target="classFrame">CoverageRecord</a></li>
<li><a href="com/illumina/basespace/DownloadEvent.html" title="class in com.illumina.basespace" target="classFrame">DownloadEvent</a></li>
<li><a href="com/illumina/basespace/DownloadListener.html" title="interface in com.illumina.basespace" target="classFrame"><i>DownloadListener</i></a></li>
<li><a href="com/illumina/basespace/DownloadProgressListener.html" title="interface in com.illumina.basespace" target="classFrame"><i>DownloadProgressListener</i></a></li>
<li><a href="com/illumina/basespace/ExtendedFileInfo.html" title="class in com.illumina.basespace" target="classFrame">ExtendedFileInfo</a></li>
<li><a href="com/illumina/basespace/FetchParams.html" title="class in com.illumina.basespace" target="classFrame">FetchParams</a></li>
<li><a href="com/illumina/basespace/File.html" title="class in com.illumina.basespace" target="classFrame">File</a></li>
<li><a href="com/illumina/basespace/FileFetchParams.html" title="class in com.illumina.basespace" target="classFrame">FileFetchParams</a></li>
<li><a href="com/illumina/basespace/FileMetaData.html" title="class in com.illumina.basespace" target="classFrame">FileMetaData</a></li>
<li><a href="com/illumina/basespace/ForbiddenResourceException.html" title="class in com.illumina.basespace" target="classFrame">ForbiddenResourceException</a></li>
<li><a href="com/illumina/basespace/ItemListMetaData.html" title="class in com.illumina.basespace" target="classFrame">ItemListMetaData</a></li>
<li><a href="com/illumina/basespace/Project.html" title="class in com.illumina.basespace" target="classFrame">Project</a></li>
<li><a href="com/illumina/basespace/ResponseStatus.html" title="class in com.illumina.basespace" target="classFrame">ResponseStatus</a></li>
<li><a href="com/illumina/basespace/Run.html" title="class in com.illumina.basespace" target="classFrame">Run</a></li>
<li><a href="com/illumina/basespace/Sample.html" title="class in com.illumina.basespace" target="classFrame">Sample</a></li>
<li><a href="com/illumina/basespace/User.html" title="class in com.illumina.basespace" target="classFrame">User</a></li>
<li><a href="com/illumina/basespace/VariantFetchParams.html" title="class in com.illumina.basespace" target="classFrame">VariantFetchParams</a></li>
<li><a href="com/illumina/basespace/VariantFetchParams.ReturnFormat.html" title="enum in com.illumina.basespace" target="classFrame">VariantFetchParams.ReturnFormat</a></li>
<li><a href="com/illumina/basespace/VariantRecord.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord</a></li>
<li><a href="com/illumina/basespace/VariantRecord.AdditionalInfo.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.AdditionalInfo</a></li>
<li><a href="com/illumina/basespace/VariantRecord.GenotypeInfo.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.GenotypeInfo</a></li>
<li><a href="com/illumina/basespace/VariantRecord.SampleFormat.html" title="class in com.illumina.basespace" target="classFrame">VariantRecord.SampleFormat</a></li>
</ul>
</div>
</body>
</html>
134 changes: 49 additions & 85 deletions javadoc/apidocs/allclasses-noframe.html
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@@ -1,86 +1,50 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!--NewPage-->
<HTML>
<HEAD>
<!-- Generated by javadoc (build 1.6.0_31) on Tue Sep 11 14:54:09 PDT 2012 -->
<META http-equiv="Content-Type" content="text/html; charset=UTF-8">
<TITLE>
All Classes (BaseSpace Software Development Kit for Java 1.0-SNAPSHOT API)
</TITLE>

<META NAME="date" CONTENT="2012-09-11">

<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">


</HEAD>

<BODY BGCOLOR="white">
<FONT size="+1" CLASS="FrameHeadingFont">
<B>All Classes</B></FONT>
<BR>

<TABLE BORDER="0" WIDTH="100%" SUMMARY="">
<TR>
<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="com/illumina/basespace/AccessDeniedException.html" title="class in com.illumina.basespace">AccessDeniedException</A>
<BR>
<A HREF="com/illumina/basespace/AppResult.html" title="class in com.illumina.basespace">AppResult</A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceConfiguration.html" title="interface in com.illumina.basespace"><I>BaseSpaceConfiguration</I></A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceEntity.html" title="class in com.illumina.basespace">BaseSpaceEntity</A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceSession.html" title="interface in com.illumina.basespace"><I>BaseSpaceSession</I></A>
<BR>
<A HREF="com/illumina/basespace/BaseSpaceSessionManager.html" title="class in com.illumina.basespace">BaseSpaceSessionManager</A>
<BR>
<A HREF="com/illumina/basespace/CoverageMetaData.html" title="class in com.illumina.basespace">CoverageMetaData</A>
<BR>
<A HREF="com/illumina/basespace/CoverageRecord.html" title="class in com.illumina.basespace">CoverageRecord</A>
<BR>
<A HREF="com/illumina/basespace/DownloadEvent.html" title="class in com.illumina.basespace">DownloadEvent</A>
<BR>
<A HREF="com/illumina/basespace/DownloadListener.html" title="interface in com.illumina.basespace"><I>DownloadListener</I></A>
<BR>
<A HREF="com/illumina/basespace/DownloadProgressListener.html" title="interface in com.illumina.basespace"><I>DownloadProgressListener</I></A>
<BR>
<A HREF="com/illumina/basespace/ExtendedFileInfo.html" title="class in com.illumina.basespace">ExtendedFileInfo</A>
<BR>
<A HREF="com/illumina/basespace/FetchParams.html" title="class in com.illumina.basespace">FetchParams</A>
<BR>
<A HREF="com/illumina/basespace/File.html" title="class in com.illumina.basespace">File</A>
<BR>
<A HREF="com/illumina/basespace/FileMetaData.html" title="class in com.illumina.basespace">FileMetaData</A>
<BR>
<A HREF="com/illumina/basespace/ForbiddenResourceException.html" title="class in com.illumina.basespace">ForbiddenResourceException</A>
<BR>
<A HREF="com/illumina/basespace/Project.html" title="class in com.illumina.basespace">Project</A>
<BR>
<A HREF="com/illumina/basespace/Response.html" title="class in com.illumina.basespace">Response</A>
<BR>
<A HREF="com/illumina/basespace/ResponseStatus.html" title="class in com.illumina.basespace">ResponseStatus</A>
<BR>
<A HREF="com/illumina/basespace/Run.html" title="class in com.illumina.basespace">Run</A>
<BR>
<A HREF="com/illumina/basespace/Sample.html" title="class in com.illumina.basespace">Sample</A>
<BR>
<A HREF="com/illumina/basespace/User.html" title="class in com.illumina.basespace">User</A>
<BR>
<A HREF="com/illumina/basespace/VariantFetchParams.html" title="class in com.illumina.basespace">VariantFetchParams</A>
<BR>
<A HREF="com/illumina/basespace/VariantFetchParams.ReturnFormat.html" title="enum in com.illumina.basespace">VariantFetchParams.ReturnFormat</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.html" title="class in com.illumina.basespace">VariantRecord</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.AdditionalInfo.html" title="class in com.illumina.basespace">VariantRecord.AdditionalInfo</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.GenotypeInfo.html" title="class in com.illumina.basespace">VariantRecord.GenotypeInfo</A>
<BR>
<A HREF="com/illumina/basespace/VariantRecord.SampleFormat.html" title="class in com.illumina.basespace">VariantRecord.SampleFormat</A>
<BR>
</FONT></TD>
</TR>
</TABLE>

</BODY>
</HTML>
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_07) on Fri Sep 28 09:20:14 PDT 2012 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>All Classes (BaseSpace Software Development Kit for Java null API)</title>
<meta name="date" content="2012-09-28">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<h1 class="bar">All Classes</h1>
<div class="indexContainer">
<ul>
<li><a href="com/illumina/basespace/AccessDeniedException.html" title="class in com.illumina.basespace">AccessDeniedException</a></li>
<li><a href="com/illumina/basespace/AppResult.html" title="class in com.illumina.basespace">AppResult</a></li>
<li><a href="com/illumina/basespace/BaseSpaceConfiguration.html" title="interface in com.illumina.basespace"><i>BaseSpaceConfiguration</i></a></li>
<li><a href="com/illumina/basespace/BaseSpaceConnectionException.html" title="class in com.illumina.basespace">BaseSpaceConnectionException</a></li>
<li><a href="com/illumina/basespace/BaseSpaceEntity.html" title="class in com.illumina.basespace">BaseSpaceEntity</a></li>
<li><a href="com/illumina/basespace/BaseSpaceException.html" title="class in com.illumina.basespace">BaseSpaceException</a></li>
<li><a href="com/illumina/basespace/BaseSpaceSession.html" title="interface in com.illumina.basespace"><i>BaseSpaceSession</i></a></li>
<li><a href="com/illumina/basespace/BaseSpaceSessionManager.html" title="class in com.illumina.basespace">BaseSpaceSessionManager</a></li>
<li><a href="com/illumina/basespace/BasicResponse.html" title="class in com.illumina.basespace">BasicResponse</a></li>
<li><a href="com/illumina/basespace/CoverageMetaData.html" title="class in com.illumina.basespace">CoverageMetaData</a></li>
<li><a href="com/illumina/basespace/CoverageRecord.html" title="class in com.illumina.basespace">CoverageRecord</a></li>
<li><a href="com/illumina/basespace/DownloadEvent.html" title="class in com.illumina.basespace">DownloadEvent</a></li>
<li><a href="com/illumina/basespace/DownloadListener.html" title="interface in com.illumina.basespace"><i>DownloadListener</i></a></li>
<li><a href="com/illumina/basespace/DownloadProgressListener.html" title="interface in com.illumina.basespace"><i>DownloadProgressListener</i></a></li>
<li><a href="com/illumina/basespace/ExtendedFileInfo.html" title="class in com.illumina.basespace">ExtendedFileInfo</a></li>
<li><a href="com/illumina/basespace/FetchParams.html" title="class in com.illumina.basespace">FetchParams</a></li>
<li><a href="com/illumina/basespace/File.html" title="class in com.illumina.basespace">File</a></li>
<li><a href="com/illumina/basespace/FileFetchParams.html" title="class in com.illumina.basespace">FileFetchParams</a></li>
<li><a href="com/illumina/basespace/FileMetaData.html" title="class in com.illumina.basespace">FileMetaData</a></li>
<li><a href="com/illumina/basespace/ForbiddenResourceException.html" title="class in com.illumina.basespace">ForbiddenResourceException</a></li>
<li><a href="com/illumina/basespace/ItemListMetaData.html" title="class in com.illumina.basespace">ItemListMetaData</a></li>
<li><a href="com/illumina/basespace/Project.html" title="class in com.illumina.basespace">Project</a></li>
<li><a href="com/illumina/basespace/ResponseStatus.html" title="class in com.illumina.basespace">ResponseStatus</a></li>
<li><a href="com/illumina/basespace/Run.html" title="class in com.illumina.basespace">Run</a></li>
<li><a href="com/illumina/basespace/Sample.html" title="class in com.illumina.basespace">Sample</a></li>
<li><a href="com/illumina/basespace/User.html" title="class in com.illumina.basespace">User</a></li>
<li><a href="com/illumina/basespace/VariantFetchParams.html" title="class in com.illumina.basespace">VariantFetchParams</a></li>
<li><a href="com/illumina/basespace/VariantFetchParams.ReturnFormat.html" title="enum in com.illumina.basespace">VariantFetchParams.ReturnFormat</a></li>
<li><a href="com/illumina/basespace/VariantRecord.html" title="class in com.illumina.basespace">VariantRecord</a></li>
<li><a href="com/illumina/basespace/VariantRecord.AdditionalInfo.html" title="class in com.illumina.basespace">VariantRecord.AdditionalInfo</a></li>
<li><a href="com/illumina/basespace/VariantRecord.GenotypeInfo.html" title="class in com.illumina.basespace">VariantRecord.GenotypeInfo</a></li>
<li><a href="com/illumina/basespace/VariantRecord.SampleFormat.html" title="class in com.illumina.basespace">VariantRecord.SampleFormat</a></li>
</ul>
</div>
</body>
</html>
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