On Linux, diamond is only for x86_64? #18
Comments
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Hi, I never tested these platforms but hopefully I'll be able to support them Benjamin 2015-10-06 12:39 GMT+02:00 Ben J Woodcroft notifications@github.com:
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OK, no problem. Thanks. |
bbuchfink
added a commit
that referenced
this issue
Jan 31, 2024
commit cf66ef8a27146afe575b64e135d117b212f7bd64
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 14:04:42 2024 +0100
Updated tests.
commit eae157eaae352ce9b38c268cd647ff5ffa6bdf61
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 13:57:45 2024 +0100
Updated changelog.
commit 6b2f8ebc1d421cd096ee9df7c5951fc373e54982
Merge: 8666f7e8 0c888e84
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 13:23:40 2024 +0100
Merge branch 'master' into dev
commit 0c888e84367dfba1d1ab6d23a3aa663ad3c61440
Merge: 19c730d5 56f5d14
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 13:23:25 2024 +0100
Merge branch 'master' of https://github.com/bbuchfink/diamond
commit 8666f7e853efe8c8a1d7d0bdde46ad810db7475c
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 12:34:15 2024 +0100
Fixed output.
commit a70a755c04135b310d119e69ab9a899a6ace94b0
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 31 11:09:09 2024 +0100
Changed max block size for vsens mode.
commit df9be960f04c8c41b49495746790e44784e7b138
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 16:56:36 2024 +0100
Fixed taxon format.
commit 565bd4fd37d4116cb6cbd147eed851fd627c81af
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 16:45:54 2024 +0100
Fixed error.
commit 67df3d4af021e7d39fa559064b3122dd825ab96b
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 16:43:01 2024 +0100
Added taxon lineage option.
commit e4203e82775fb50789bfe5826b0dc50aa2fc8e67
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 15:57:39 2024 +0100
Added gapped seqs to help.
commit 98b64461cae30e158fbd2e27eaf9d00d9fb53a59
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 15:47:50 2024 +0100
Fixed warnings.
commit ab40c4a23dc16a11c9af50657ba40bf3ea734f8d
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 15:41:20 2024 +0100
Fixed warnings.
commit d9dc1ae43167fb8f496b97742e021b0300b24526
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 15:26:53 2024 +0100
Fixed warnings.
commit ad6c31999575a2f0b3e84192a91a73fa0eab473e
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 15:02:00 2024 +0100
Updated version.
commit 30f509a8476c8b1ed4dd1497244da554301412ae
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 14:39:42 2024 +0100
Added shapes-30x10 mode.
commit dc64958415be88c5ecfbb4b47e48ad5c34f78e4d
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 14:29:17 2024 +0100
Add per round cutoff options.
commit 4193abd0cf7da091bd25b794c278577075c0b9f8
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 13:43:06 2024 +0100
Added setting ccd per round.
commit d78caa14b78cd8f690a02df08ef7951934486e41
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jan 30 12:59:40 2024 +0100
Added shapes30x10 mode.
commit 30221fa8e1b1564fc28ab669a4f08a89da45b44b
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 29 16:16:44 2024 +0100
Removed famsa, incremental clustering.
commit ba15651e286bfc4460343faeb5b08dd98bc97176
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 29 15:58:38 2024 +0100
Update reassign for mutual cover.
commit cf5a84ec02058870e0c42020c66dcf423baf4383
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 29 15:30:01 2024 +0100
Updated recluster for mutual coverage.
commit e6032ba102c805d565096b4cfc1e0c0d34ad9168
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jan 26 17:52:49 2024 +0100
Update recluster for mutual cover.
commit bdee2616dfbe9195841bac59438d5cc44733a5d4
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jan 26 16:37:24 2024 +0100
Fixed issue with length lookup.
commit 739be0ea92aee7d32837ab39c70efc2a792f37aa
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jan 26 11:20:14 2024 +0100
Fixed issue with round values.
commit 34f0b3a73204117b41efc20883fa583e3a89339a
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Jan 25 13:28:44 2024 +0100
Reworked storing target ids in hits logic.
commit 76e17c7443d4362bd821f855a2e8dc8598c67710
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 24 18:00:39 2024 +0100
Rework target ids in seed array.
commit 31f0f34a3c06e52c9a87f565260375376601553e
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 24 15:08:28 2024 +0100
Fixed error.
commit 69680a20ad46fbc9618d5fca59cb7b76104946ca
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 24 13:20:32 2024 +0100
Use ccd=0 in last round.
commit a428f0d9dfcd3225ec34bb358984ac1c6a2e4cd0
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 24 13:07:51 2024 +0100
Added round approx id setting.
commit 261cf75522b9a703644329bfb24164d53d126e84
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jan 24 12:49:19 2024 +0100
Fixed error.
commit 1f3f8a7acd480f4814f5a0f9eaee5b17630c7b11
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 22 17:00:42 2024 +0100
Rework round coverage option
commit fb55d8eba76e8726b241d3f4fee81e73922af753
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 22 15:55:01 2024 +0100
Apply evalue max in cascaded clustering.
commit ab498d0bbffe523b4e3087149cd7b6be5c29b096
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jan 22 15:25:31 2024 +0100
Apply coverage increment.
commit f5dd1367549c7932185c78218b0eb6c4618e7e01
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jan 19 16:49:23 2024 +0100
Fixed evalue calculation.
commit 87aff2d0eab54fc4440a5046f8d06f12440fec1b
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jan 12 12:26:15 2024 +0100
Added shapes.
commit a49026b0319b04675ac3fa65c851bb116f792c43
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Jan 11 14:52:17 2024 +0100
Added new weight 10 modes.
commit 590e1756fd198b288b4010414010d8b9baed089a
Author: Vincent Spath <90271444+v-spath@users.noreply.github.com>
Date: Wed Nov 29 17:24:01 2023 +0100
DNA only mapping (#18)
* seed repetition cutoff
* remove overhead
* back to array
* test
* repetitive filter
* changed float to double for parser
* fixed count typo
* removed io header
* min heap seed filtering
* fix heap
* filter multithreaded
* multithreaded optimized
* locked guard
* test new multithreading filter
* filter multithreaded optimized
* pass thread index during creation of thread
* check smallest element before adding to queue
* remove unordered set, replace by checking against cutoff value
* refactor
* new heuristics
* add ungapped extension to set
* new timer
* temp
* new timer
* ssh
* d
* Delete Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa.gz
* new timer
* timer
* remove timer
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa.gz
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna.chromosome.Pt.fa.gz
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz
* refactor
* seed filter
* target filter
* target filter
* target filter
* revert
* r_ungapped to score
* fix
* wfadaptive
* setheuristicnone
* remove ungapped eval
* repetition cutoff 0
* fix filter for small index
* backup chaining and apple specifics
* revert
* test ksw2 for mac
* chaining and bug fixes and apple specifics
* backtracking
* backup chaining, with old out commented code, 1 bug left
* working_chaining
* add dna chaining condition
* basic chaining
* Delete src/align/align.cpp.save
* repetition-cutoff into WITH_DNA
* Delete libwfa2cpp.a
* add fast approximation of log2
* Delete setup.cpp.save
* delete binary obj
* remove key in RepetitiveCounter
* removed vector of priority_queues as class member
* Update dna_index.cpp
check size repetitive before adding to queue
* extended struct SeedMatch
* fixed bug 100 % ungapped score
* struct for data an chain
* removed std output
* update chain.cpp
* change built queue
* add sorting before chaining
* chaining only for one target at a time
* head
* comments
* include wfa2 in comment
* include wfa comment
* Update log2_fast.h
* chain_end two parameters
* fixed bug backtrack
* make variables const if possible
* parameters struct
* struct anchor data
* update documentation
* backtrack simplification
* update backtrack
* delete wrong commit
* map hsp
* remove RepetitiveCounter struct
* updated chain struct
* construction Chain Object
* chain Standard Komparator
* use iterator
* mapping
* correction syntax
* update indices
* mapping quality
* fixed index t_id
* mapping output includes n_anchors (cm)
* remove redundancy
* fixed bug match build
* primary computation for all targets
* overlap percentage of shorter chain
* fix compile error
* dna extension
* with dna compile
* debug test
* Update extension.cpp
* fix segmentation fault
* test why slow
* test only map best
* test map percentage
* test 1
* sort score
* todo
* move semantics
* forward/reverse together
* test seed lookup
* Update extension.cpp
* add chaining penalties
* new primary chain computation
* Update extension.cpp
* Update extension.cpp
* simplify chain structure
* use PAF when only mapping
* Update config.cpp
* compile error on mac
* Merge branch 'personal_dev' into dev
# Conflicts:
# src/basic/config.cpp
# src/run/config.cpp
# src/run/double_indexed.cpp
# src/search/stage0.cpp
* Todo: align long reads
* basic chaining alignment
* fix bug short reads reverse (now correct)
* chain alignment
* integrate ksw2 correctly
* update WFA
* corrected anchor alignment
* fixed residue matches mapping
* change semantics
* refacator chain alignment
* integrate WFA
* correct primary computation
* Update extension.h
* chaining penalties scaling factors
* correction chain alignment
* compute correct alignment score
* correct paf format DNA
* clean up includes
* filter chains
* comments
* wfa low memory mode
* filter chains with lower bound
---------
Co-authored-by: Dimi <dimitrios_K@gmx.de>
Co-authored-by: Dimitrios Koutsogiannis <dkoutso@taco.eb.local>
Co-authored-by: Dimi99 <73211787+Dimi99@users.noreply.github.com>
Co-authored-by: vinceaps <90271444+vinceaps@users.noreply.github.com>
Co-authored-by: Benjamin Buchfink <buchfink@gmail.com>
commit b8f12f41864bc2c2795bcf9ed22b867d717bc5da
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Nov 22 10:52:38 2023 +0100
Add cmake flag for famsa.
commit 7fdecdb2879997b6b6a1079ed28ee2ecacf25229
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Nov 15 16:52:41 2023 +0100
Added hit culling.
commit e3eadb911af4df39aa08bf0f560ec1068d4f5211
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Nov 9 17:02:54 2023 +0100
Fixed non x86 compile.
commit b258c2f5be5421c5c80e44b77b4870d24ac6c603
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Nov 9 16:58:40 2023 +0100
Fixed non x86 compile.
commit e055ce95c60e769da4f496232108b3968d0c4bf9
Author: Vincent Spath <90271444+v-spath@users.noreply.github.com>
Date: Tue Nov 7 15:59:40 2023 +0100
DNA chaining (#17)
* seed repetition cutoff
* remove overhead
* back to array
* test
* repetitive filter
* changed float to double for parser
* fixed count typo
* removed io header
* min heap seed filtering
* fix heap
* filter multithreaded
* multithreaded optimized
* locked guard
* test new multithreading filter
* filter multithreaded optimized
* pass thread index during creation of thread
* check smallest element before adding to queue
* remove unordered set, replace by checking against cutoff value
* refactor
* new heuristics
* add ungapped extension to set
* new timer
* temp
* new timer
* ssh
* d
* Delete Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa.gz
* new timer
* timer
* remove timer
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa.gz
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna.chromosome.Pt.fa.gz
* temp
* Delete Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz
* refactor
* seed filter
* target filter
* target filter
* target filter
* revert
* r_ungapped to score
* fix
* wfadaptive
* setheuristicnone
* remove ungapped eval
* repetition cutoff 0
* fix filter for small index
* backup chaining and apple specifics
* revert
* test ksw2 for mac
* chaining and bug fixes and apple specifics
* backtracking
* backup chaining, with old out commented code, 1 bug left
* working_chaining
* add dna chaining condition
* basic chaining
* Delete src/align/align.cpp.save
* repetition-cutoff into WITH_DNA
* Delete libwfa2cpp.a
* add fast approximation of log2
* Delete setup.cpp.save
* delete binary obj
* remove key in RepetitiveCounter
* removed vector of priority_queues as class member
* Update dna_index.cpp
check size repetitive before adding to queue
* extended struct SeedMatch
* fixed bug 100 % ungapped score
* struct for data an chain
* removed std output
* update chain.cpp
* change built queue
* add sorting before chaining
* chaining only for one target at a time
* head
* comments
* include wfa2 in comment
* include wfa comment
* Update log2_fast.h
* chain_end two parameters
* fixed bug backtrack
* make variables const if possible
* parameters struct
* struct anchor data
* update documentation
* backtrack simplification
* update backtrack
* delete wrong commit
* remove RepetitiveCounter struct
* updated chain struct
* construction Chain Object
* chain Standard Komparator
* use iterator
* correction syntax
* fixed index t_id
* move semantics
---------
Co-authored-by: Dimi <dimitrios_K@gmx.de>
Co-authored-by: Dimitrios Koutsogiannis <dkoutso@taco.eb.local>
Co-authored-by: Dimi99 <73211787+Dimi99@users.noreply.github.com>
Co-authored-by: vinceaps <90271444+vinceaps@users.noreply.github.com>
Co-authored-by: Benjamin Buchfink <buchfink@gmail.com>
commit 19c730d59620efa02e9b7a6928283962767a64c3
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Nov 7 15:54:53 2023 +0100
Add output field for lineage.
commit 7cb96085fa2950f0d500e468331d0f7a8367c182
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Nov 7 10:48:11 2023 +0100
Check for identical block.
commit 8438e3387278dad3405ed9c2f7b1b6a29be94407
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Oct 26 14:23:56 2023 +0200
remove alignment computation.
commit 52649efac7cc76c4ab7822c7848cd74763582c07
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Oct 25 17:35:38 2023 +0200
Filter by mutual coverage.
commit 1bfa4e2a82e52fb91241c48eeb349a29f7dbed53
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Oct 25 17:08:11 2023 +0200
Added alignment.
commit 1149045d6c55fcf40604248e57c8c93b3ddbd4ab
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Oct 25 12:55:15 2023 +0200
Fix centroid lookup.
commit dcef57b958768f36c69dc6a1c19527082a043f9e
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Oct 24 16:35:01 2023 +0200
Added parallel processing.
commit c0ebcc97a3f0201ca5a271199795a144f97c49c5
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Oct 24 13:48:51 2023 +0200
Fixed bug.
commit ff8b053116a7df875e59fafff7e933da10c2bddf
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Oct 24 13:43:18 2023 +0200
Check for indirection.
commit 539416b50a933cde0594c9a110b4945d6c366d57
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Oct 24 12:33:32 2023 +0200
Write output.
commit 0fdfe23a8695efeb8e824fb07e79a959e5ce317a
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Oct 23 16:59:07 2023 +0200
Process alignments.
commit 83b0442e0efc20f28e703d16ebf52503015189d0
Merge: 8d0ce419 5171828f
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Sat Oct 21 14:39:44 2023 +0200
Merge branch 'dev' of https://github.com/bbuchfink/diamond_dev into dev
commit 8d0ce419c8bf9c835403ca1afd1ee0b8be5d4b5e
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Sat Oct 21 14:39:34 2023 +0200
Fixed error.
commit 5171828faf97348653d5447f4765e8c041075c58
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Oct 20 14:50:12 2023 +0200
Fixed error.
commit 367ac23fc68acbb4c195d6136f5d83d2e24a9770
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Oct 19 17:38:31 2023 +0200
Added profile alignment.
commit 03b51a98073196fb03494979fa03ee917448b376
Merge: 13a3e512 6096ef28
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Oct 18 16:26:27 2023 +0200
Merge branch 'dev' of https://github.com/bbuchfink/diamond_dev into dev
commit 13a3e512efd362d6746359fd17580fc4dfee6908
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Oct 18 16:26:08 2023 +0200
Fixed blastdb.
commit 6096ef2841d6e0c87d58292b4238eb9ce3d6b17d
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Oct 17 16:53:37 2023 +0200
Added local alignment of profiles.
commit 8a5eca0d72348012775177f929447ddcfd5db0a7
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Oct 13 15:32:15 2023 +0200
Fix leak.
commit d2563fd8c85c6891064ce2a8010a5c38e94c63b9
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Oct 13 15:04:16 2023 +0200
Added profile-recluster workflow.
commit d4b638e4fee52ae4024d35e109e81bed1f9ee32d
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Oct 12 17:03:33 2023 +0200
Added MSA computation.
commit a7e375040af808cdea6ae2bfc9a43b2fb285b1db
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Oct 12 14:24:55 2023 +0200
Added FAMSA.
commit 88119a03726d7288c406237d0b975c1ad304c426
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Sep 27 16:52:47 2023 +0200
Use letter count of subdb in clustering.
commit bed1a484f7f28beb654d12817431c8a7610faca0
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Sep 27 16:28:07 2023 +0200
Added length lookup.
commit 81843d6fa42081219f89d0833838b8d481dfec23
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Sep 26 13:54:08 2023 +0200
Use coverage increment in earlier rounds.
commit 53a20c61e5f4e68b41505bc08dcb776070cbca35
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Sep 26 13:40:00 2023 +0200
Use ccd=0 in linear stages.
commit e5699a10fb0b8da76f1152ac5773d3cafdb304a1
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Sep 18 16:52:45 2023 +0200
Use median sequence.
commit da749bc1fb1826bebbeadd80ad8a46adc70dc118
Merge: eb336685 a1c35d03
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Sep 18 11:44:00 2023 +0200
Merge branch 'dev' of https://github.com/bbuchfink/diamond_dev into dev
commit eb33668574a28a84ec585613c8d31de644d89ff6
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Sep 18 11:43:25 2023 +0200
Fixed subject source range.
commit a1c35d03f4ba0f4a56461d431df6dbde277b85eb
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Sep 11 14:50:49 2023 +0200
Auto set min length ratio.
commit 612df402ca9fafc2c5cfed2d54b62354041edb8f
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Sep 11 13:43:35 2023 +0200
Added mutual cover clustering.
commit c909a44381fa52d6a359d44b607fedc59690eeff
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Sep 8 11:15:33 2023 +0200
Added connected component depth.
commit b613c12c6d4f5abaa9914075626414f39392b7b0
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Sep 6 16:58:28 2023 +0200
Added cc clustering.
commit abd593504534f23632b98787f5053d5d93d23dc4
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Sep 5 17:04:45 2023 +0200
Added callback for bidirectional clustering.
commit 76b222058f50e2fee6664159e0df47cb518b667b
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Sep 5 15:46:27 2023 +0200
Added --no-reassign to gvc.
commit 268090426a40c2b22f04b8a0ced5101b6195ba5d
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Sep 5 10:31:51 2023 +0200
Fixed approx_id for anchored swipe.
commit 4acb106d2495d0cd67481567607c81184081fbf9
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Aug 28 14:56:25 2023 +0200
Fixed bug.
commit ccae0326a15e745e07c54edced47e3284b92c949
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Aug 28 13:26:12 2023 +0200
Added length ratio filter.
commit 43eb577fd11eca0a84901b558013a409edcfd5c6
Merge: 49c3fffb 7d89b2b0
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Aug 25 16:04:42 2023 +0200
Merge branch 'dev' of https://github.com/bbuchfink/diamond_dev into dev
commit 49c3fffb58f22405b1496b2f18fe8c04e35298b2
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Aug 25 16:03:43 2023 +0200
Added len ratio filter.
commit 7d89b2b0197901a8727e2814ea35605e2cf5cdaf
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Jul 20 16:12:54 2023 +0200
Fixed warning.
commit 6c4c4d7994f80f8603027cabf1d966ead048b428
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Thu Jul 20 16:02:58 2023 +0200
Added sorting.
commit 97c350241a5b309b3fc1862b3666365834cfbe39
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jul 19 11:23:49 2023 +0200
Fixed full_qqual field.
commit 4ba1920cbe2d4ed3cb45d803126296a2bcc1a775
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jul 18 18:50:34 2023 +0200
Add len-ratio filter.
commit 58bf56ec153b9f5944b672db9f136aec0e1af705
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Tue Jul 18 16:19:29 2023 +0200
Added symmetric option to gvc.
commit 4d8f6d6aee2d895d7a62ace47689432dc31e6de3
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Mon Jul 17 16:43:32 2023 +0200
Added mutual cov lin-stage1.
commit 6693d01a2004346cd35f209f448aa5803a347737
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jul 14 16:59:11 2023 +0200
Added linclust stage with mutual cov.
commit dd3fb04acc23760257664ea6c4f6127dd576f8c6
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jul 14 12:41:03 2023 +0200
Added mutual coverage.
commit 97c1e2e54dd5a540800b022a7e3bb513ae5da429
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jul 12 15:55:04 2023 +0200
Fixed sam query field.
commit 2af1fa4028f30bbb9da4363d80f268ead311e3f5
Merge: e1d1c047 23a1ba7
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Wed Jul 12 15:54:11 2023 +0200
Merge branch 'master' into dev
commit e1d1c047d6459ced42b85ce897a5d42a7640714e
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jun 23 15:11:53 2023 +0200
Added length ratio filter.
commit 59a52cd0bcf1458bc311b36ba3911fd00bee1319
Merge: 561b9632 af4fc64
Author: Benjamin Buchfink <buchfink@gmail.com>
Date: Fri Jun 23 14:24:04 2023 +0200
Merge branch 'master' into dev
commit 561b96324e32731019b3e3ca7d3df5b54caa9217
Merge: 70409de0 749de49c
Author: Dimi99 <73211787+Dimi99@users.noreply.github.com>
Date: Wed Jun 21 14:21:55 2023 +0200
Merge pull request #12 from Dimi99/dev
Add the WFA Extension-Option
commit 749de49c7d90b6fee3c331bd009fb86dfcce4557
Merge: 141f517e 52cdcbae
Author: Dimi <dimitrios_K@gmx.de>
Date: Wed Jun 21 14:13:18 2023 +0200
Merge branch 'dev' of github.com:Dimi99/diamond_dev into dev
commit 141f517ee52480501ac3a79b72be8ca05818cde0
Author: Dimi <dimitrios_K@gmx.de>
Date: Wed Jun 21 14:13:09 2023 +0200
changes
commit 52cdcbae9023e38c94235778a33abb4542425b6a
Merge: c6c9bfff 70409de0
Author: Dimi99 <73211787+Dimi99@users.noreply.github.com>
Date: Wed Jun 21 12:35:12 2023 +0200
Merge branch 'dev' into dev
commit c6c9bfff21d275992a55da542553120d6af0231a
Author: Dimi <dimitrios_K@gmx.de>
Date: Wed Jun 21 12:31:25 2023 +0200
cmake
commit 9a19d041c72f09aca50a41913b2adb8e4f10eae8
Author: Dimi <dimitrios_K@gmx.de>
Date: Wed Jun 21 12:30:59 2023 +0200
cmake
commit 5dd3ac5e6cd6db4062e2da9b726d155ba2f823e6
Author: Dimi <dimitrios_K@gmx.de>
Date: Wed Jun 21 12:23:41 2023 +0200
timer
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Hi,
I just wanted to check, I presume that diamond is not meant for mips, arm or i686? They seem to not be building on these architectures:
arm http://hydra.gnu.org/build/701534/nixlog/1
mips http://hydra.gnu.org/build/700108/nixlog/1
i686 http://hydra.gnu.org/build/700494/nixlog/1
I understand if supporting these platforms is not a priority, I just wanted to double check before I disable the building of them in guix. x86_64 works great though!
Thanks,
ben
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