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Ka Ming Nip edited this page Apr 1, 2023 · 29 revisions

Visualization of 6,912 cells from the Tabula Muris compendium in RNA-Scoop

RNA-Scoop is a tool that provides an interactive visualization of single cell transcriptomes. With it, users can explore transcript expression patterns across thousands of cells.

To learn how to use the tool, please consult the following topics:

  1. Input file formats
  2. Loading a dataset
  3. Isoform view
  4. Cell cluster plot
  5. Expression gradient
  6. Gene selector
  7. Gene filterer
  8. Label set manager
  9. Saving, loading, and resetting a session
  10. Exporting figures