add pubmed source loader #379

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Triggered via push December 21, 2023 01:33

elewis2

feature/add-snakemake-rules

Status Failure

Total duration 57s

Artifacts –

npm-test.yml

on: push

Matrix: build

Annotations

30 errors and 4 warnings

node-14: src/pubmed_source/index.js#L1

'readXlsxFile' is assigned a value but never used

node-14: src/pubmed_source/index.js#L2

'fs' is assigned a value but never used

node-14: src/pubmed_source/index.js#L5

'convertRowFields' is assigned a value but never used

node-14: src/pubmed_source/index.js#L6

'rid' is assigned a value but never used

node-14: src/pubmed_source/index.js#L6

'orderPreferredOntologyTerms' is assigned a value but never used

node-14: src/pubmed_source/index.js#L7

'_entrezGene' is assigned a value but never used

node-14: src/pubmed_source/index.js#L8

'_pubmed' is assigned a value but never used

node-14: src/pubmed_source/index.js#L12

'errorLogPrefix' is defined but never used

node-14: src/pubmed_source/index.js#L14

Expected blank line before this statement

node-14: src/pubmed_source/index.js#L15

'source' is not defined

node-12: src/pubmed_source/index.js#L1

'readXlsxFile' is assigned a value but never used

node-12: src/pubmed_source/index.js#L2

'fs' is assigned a value but never used

node-12: src/pubmed_source/index.js#L5

'convertRowFields' is assigned a value but never used

node-12: src/pubmed_source/index.js#L6

'rid' is assigned a value but never used

node-12: src/pubmed_source/index.js#L6

'orderPreferredOntologyTerms' is assigned a value but never used

node-12: src/pubmed_source/index.js#L7

'_entrezGene' is assigned a value but never used

node-12: src/pubmed_source/index.js#L8

'_pubmed' is assigned a value but never used

node-12: src/pubmed_source/index.js#L12

'errorLogPrefix' is defined but never used

node-12: src/pubmed_source/index.js#L14

Expected blank line before this statement

node-12: src/pubmed_source/index.js#L15

'source' is not defined

node-16: src/pubmed_source/index.js#L1

'readXlsxFile' is assigned a value but never used

node-16: src/pubmed_source/index.js#L2

'fs' is assigned a value but never used

node-16: src/pubmed_source/index.js#L5

'convertRowFields' is assigned a value but never used

node-16: src/pubmed_source/index.js#L6

'rid' is assigned a value but never used

node-16: src/pubmed_source/index.js#L6

'orderPreferredOntologyTerms' is assigned a value but never used

node-16: src/pubmed_source/index.js#L7

'_entrezGene' is assigned a value but never used

node-16: src/pubmed_source/index.js#L8

'_pubmed' is assigned a value but never used

node-16: src/pubmed_source/index.js#L12

'errorLogPrefix' is defined but never used

node-16: src/pubmed_source/index.js#L14

Expected blank line before this statement

node-16: src/pubmed_source/index.js#L15

'source' is not defined

docker build

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-node@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-node@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-node@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/