Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update to CIViC API v2.4 #152

Merged
merged 2 commits into from
Apr 24, 2024

Conversation

mathieulemieux
Copy link
Member

New CIViC API v2.4 is making breaking changes to schema. This is why the cron was failing.

Now a variant get assigned a feature instead of a gene, and a feature can be either of type GENE or FACTOR.

As of yesterday, there is no feature of type FACTOR in CIViC yet, so this option is not implemented since we have no data to test it.

Also in this PR are changes to the spec.json file so it will actually fail prematurely if records aren't complying.

@mathieulemieux mathieulemieux self-assigned this Apr 23, 2024

This comment has been minimized.

@mathieulemieux mathieulemieux merged commit 9052324 into develop Apr 24, 2024
5 checks passed
Copy link

Unit Test Results

0 files  ±0  0 suites  ±0   0s ⏱️ ±0s
0 tests ±0  0 ✔️ ±0  0 💤 ±0  0 ❌ ±0 

Results for commit 9052324. ± Comparison against base commit 27511ed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants