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ReleaseNotes

Daniel L. Ayres edited this page Dec 3, 2018 · 7 revisions

BEAGLE release notes

version 3.1.2

  • Further fixes to pthread linking problems for Linux compilation under GCC;
  • Fixed issue with odd state counts and CPU SSE;
  • Fixed issue with non nucleotide state counts on AMD GPUs;
  • Adjustments to CPU auto-threading heuristics.

version 3.1.1

  • Fixed pthread linking issue on Linux which prevented some programs from loading CPU plugin;
  • Fixed issue with multi-partition mode and unrooted trees on CPU implementation (multi-partition on CPU typically only used for debugging)

version 3.1.0

  • Automatic resource selection via beagleGetBenchmarkedResourceList;
  • Control of CPU threading with beagleSetCPUThreadCount;
  • CPU implementation now defaults to non-threaded implementation to replicate behaviour of previous versions;
  • Improved CPU auto-threading to use fewer threads for better performance in some scenarios;
  • Improved performance for CUDA implementation when rescaling (improved synchonization of streams).

version 3.0.2

  • Fixed macOS installer to place BEAGLE JNI library in correct location;
  • Removed OpenCL implementation from macOS build and installer, as OpenCL is being deprecated by Apple.

version 3.0.1

  • Fixed issue with GPU implementation (undersized array allocation).

version 3.0.0

  • Improved performance for partitioned data sets;
  • Improved performance for large trees with short alignments;
  • Improved performance for default CPU implementation, via use of threading;
  • Several bug fixes.

version 2.1.2

  • Fixed OS X binary release issue with GNU libtool shared library dependency.

version 2.1.1

  • Fixed OS X binary release compatibility with system versions 10.6, 10.7, and 10.8.

version 2.1

  • Support for OpenCL on CPU for Apple devices;
  • SSE and CUDA plugins for Windows reintroduced;
  • Windows installer detects previous versions and removes them automatically;
  • Other bug fixes, including ones that affected OpenCL performance.

version 2.0

  • OpenCL support for GPUs, including AMD, and CPUs (multicore and vectorisation);
  • Multi-epoch substitution models;
  • Bug fixes and performance improvements.

version 1.0

  • Initial release.
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