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BEDApub

Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel

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besca besca Public

BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

Python 46 16
splicekit splicekit Public

splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

Python 13 3
designit designit Public

Blocking and randomization for experimental design

HTML 7 1
space-microbe space-microbe Public

Python 4
bescape bescape Public

BESCApe is a cell deconvolution package.

HTML 3 1
GeMS GeMS Public

Gene set management system based on a MongoDB backend

Python 3 1

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Showing 10 of 46 repositories

HBVouroboros Public
HBVouroboros automates sequencing-based HBV genotyping and expression profiling

Python 2 GPL-3.0 1 5 2 Updated May 6, 2024
ribiosUtils Public
The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery

C 0 1 1 1 Updated Apr 30, 2024
splicekit Public
splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

Python 13 3 1 0 Updated Apr 25, 2024
bksnake Public
Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow

Python 2 0 0 0 Updated Apr 17, 2024
GeMS Public
Gene set management system based on a MongoDB backend

Python 3 1 0 1 Updated Apr 17, 2024
ribiosScripts Public
Rscripts as command-line tools from the corresponding repository on BEDA github.

R 1 GPL-3.0 0 0 0 Updated Apr 10, 2024
MelanomaCITResponse_scRNAseq_TILandPBMC_publication Public
This repository includes notebooks utilized to produce results for the publication "Myeloid-T cell interplay, cell state transitions and checkpoint inhibitor response in melanoma"

Jupyter Notebook 0 0 0 0 Updated Apr 8, 2024
designit Public
Blocking and randomization for experimental design

HTML 7 1 13 (2 issues need help) 3 Updated Apr 4, 2024
ribiosAnnotation Public
Annotate features (genes, mRNAs, proteins, ...) with ribios

R 0 1 2 0 Updated Apr 4, 2024
besca Public
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

Python 46 GPL-3.0 16 22 (1 issue needs help) 6 Updated Apr 3, 2024

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