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  1. MixInfect MixInfect Public

    Detect mixed infections in TB

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  2. cov2clusters cov2clusters Public

    Stable clustering of SARS-CoV-2 sequences from phylogenetic trees

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  3. vcfProcess vcfProcess Public

    Variant Call Format to CSV and FASTA with filtering of SNPs and INDELs and identification of mixed infection

    R 1 1

  4. SNPdistance SNPdistance Public

    Pairwise SNP distance matrix from FASTA

  5. cluster_by_SNPs cluster_by_SNPs Public

    Genomic clusters from SNP distance matrix

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  6. Clustering_simulations Clustering_simulations Public

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