added json structures

client/src/components/Admin/AddNewObject.js

@@ -0,0 +1,64 @@
+import React, { useState, useEffect } from 'react';
+import axios from 'axios';
+import styled from 'styled-components';
+import CustomMessages from '../Shared/CustomMessages';
+import CustomSelect from '../Shared/CustomSelect';
+import CustomInputText from '../Shared/CustomInputText';
+import { InputTextarea } from 'primereact/inputtextarea';
+import {dataTypes} from '../Shared/Enums';
+
+const StyledAddNewObject = styled.div`
+  width: 800px;
+`;
+
+const AddNewObject = () => {
+
+  const [selected, setSelected] = useState(null);
+  const [datasetName, setDatasetName] = useState('');
+  const [datasetNote, setDatasetNote] = useState('');
+  const [dataset, setDataset] = useState('');
+  const [dataObj, setDataObj] = useState('');
+
+  useEffect(() => {
+    if(selected){
+
+    }
+  }, [selected])
+
+  return(
+    <StyledAddNewObject>
+      <h3>Add new data object to the compendium</h3>
+      <div>
+        <CustomSelect 
+          selectOne
+          selected={selected}
+          options={Object.values(dataTypes).map(datatype => ({label: datatype, value: datatype}))}
+          onChange={(e) => {setSelected(e.value)}}
+          label='Select a dataset type to add: '
+        />
+      </div>
+      <div>
+        <CustomInputText 
+          className='textfield'
+          label='Dataset name:'
+          value={datasetName} 
+          onChange={(e) => {setDatasetName( e.target.value)}}
+        />
+      </div>
+      <h4>Add a DatasetNote document</h4>
+      <div>
+        <InputTextarea value={datasetNote} onChange={(e) => setDatasetNote(e.target.value)} rows={10} cols={100} />
+      </div>
+      <h4>Add a Dataset document</h4>
+      <div>
+        <InputTextarea value={dataset} onChange={(e) => setDataset(e.target.value)} rows={30} cols={100} />
+      </div>
+      <h4>Add a DataObject document</h4>
+      <div>
+        <InputTextarea value={dataObj} onChange={(e) => setDataObj(e.target.value)} rows={30} cols={100} />
+      </div>
+    </StyledAddNewObject>
+  )
+}
+
+export default AddNewObject;

client/src/components/Admin/Admin.js

@@ -8,6 +8,7 @@ import CreatePipeline from './CreatePipeline';
 import RunPipeline from './RunPipeline';
 import ProcessedDataObjects from './ProcessedDataObjects';
 import DataSubmissionManager from './DataSubmissionManager';
+import AddNewObject from './AddNewObject';
 
 const Container = styled.div`
     .title {
@@ -37,7 +38,7 @@ const TabNavigation = styled.div`
 `;
 
 const Admin = () => {
-    const [selectedMenu, setSelectedMenu] = useState('create-pipeline');
+    const [selectedMenu, setSelectedMenu] = useState('add-new-object');
 
     return(
         <StyledPage>
@@ -69,6 +70,12 @@ const Admin = () => {
                     >
                         Data Objects
                     </span>
+                    <span 
+                        className={`nav-item ${selectedMenu === 'add-new-object' ? 'active' : ''}`}
+                        onClick={(e) => {setSelectedMenu('add-new-object')}}
+                    >
+                        Add New Data Object
+                    </span>
                     <span 
                         className={`nav-item ${selectedMenu === 'data-submissions' ? 'active' : ''}`}
                         onClick={(e) => {setSelectedMenu('data-submissions')}}
@@ -91,6 +98,9 @@ const Admin = () => {
                 {
                     selectedMenu === 'data-submissions' && <DataSubmissionManager />
                 }
+                {
+                    selectedMenu === 'add-new-object' && <AddNewObject />
+                }
             </Container>
         </StyledPage>
     )

client/src/components/Admin/JSONStructures/dataobject.js

@@ -0,0 +1,137 @@
+export const baseDataObject = {
+  info: {
+    date: {
+      created: {
+        $date: "2023-00-00T00:00:00.000Z"
+      }
+    },
+    status: "complete",
+    private: false,
+    canonical: true,
+    numDownload: 0,
+    createdBy: "BHK Lab",
+    other: {
+      pipeline: {
+        url: "",
+        commit_id: ""
+      },
+      additionalRepo: [
+        {
+          repo_type: "",
+          git_url: "",
+          commit_id: ""
+        }
+      ],
+      data_preprocessing: [
+        {
+          data_type: "",
+          pipeline: {
+            git_url: "",
+            commit_id: ""
+          }
+        }
+      ],
+      rna_ref: ""
+    }
+  },
+  dataObjType: "BaseDataObject",
+  datasetType: "",
+  name: "",
+  dataset: {
+    $oid: ""
+  },
+  repositories: [
+    {
+      version: "1.0",
+      doi: "",
+      downloadLink: "",
+    }
+  ],
+  availableDatatypes: [
+    {
+      name: "rnaseq",
+      genomeType: "RNA"
+    }
+  ],
+}
+
+export const genomeDataObject = {
+  info: {
+    date: {
+      created: {
+        $date: "2023-00-00T00:00:00.000Z"
+      }
+    },
+    status: "complete",
+    private: false,
+    canonical: true,
+    numDownload: 0,
+    createdBy: "BHK Lab",
+    filteredSensitivity: true,
+    other: {
+      pipeline: {
+        url: "",
+        commit_id: ""
+      },
+      additionalRepo: [
+        {
+          repo_type: "",
+          git_url: "",
+          commit_id: ""
+        }
+      ],
+      data_preprocessing: [
+        {
+          data_type: "",
+          pipeline: {
+            git_url: "",
+            commit_id: ""
+          }
+        }
+      ],
+      rna_ref: ""
+    }
+  },
+  dataObjType: "GenomeDataObject",
+  datasetType: "",
+  name: "",
+  dataset: {
+    $oid: ""
+  },
+  repositories: [
+    {
+      version: "3.13",
+      doi: "",
+      downloadLink: ""
+    }
+  ],
+  availableDatatypes: [
+    {
+      name: "rnaseq",
+      genomeType: "RNA"
+    },
+    {
+      name: "microarray",
+      genomeType: "RNA"
+    },
+    {
+      name: "cnv",
+      genomeType: "DNA"
+    },
+    {
+      name: "fusion",
+      genomeType: "DNA"
+    },
+    {
+      name: "mutation",
+      genomeType: "DNA"
+    }
+  ],
+  tools: {
+    rna: "kallisto_0_46_1"
+  },
+  references: {
+    rna: "Gencode_v33"
+  },
+  genome: "GRCh38",
+}