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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre

Pinned

  1. Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

    JavaScript 1

  2. SYNERGxDB Public

    SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

    JavaScript 3

  3. ToxicoDB is a database of curated toxicogenomics datasets that provides convenient data summary and visualization to mine these complex data. Users can find drug and gene annotations, visualize dif…

    JavaScript 1

  4. PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 42 24

  5. mRMRe Public

    mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

    C++ 16 6

  6. Xeva Public

    XEnograft Visualization & Analysis

    R 5 4

Repositories

  • PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 42 24 58 1 Updated May 25, 2022
  • PGxVision Public

    PGxVision is short for PharmacoGenomic VISualisation and InterpretatiON. This R package is a Shiny dashboard that lets users visualize RNA-based cancer biomarkers for drug response and prognosis.

    R 1 1 0 0 Updated May 24, 2022
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 10 Apache-2.0 2 9 2 Updated May 24, 2022
  • uhn-radcure-challenge Public

    Official repository of the 2020 UHN RADCURE challenge.

    Jupyter Notebook 8 4 1 5 Updated May 24, 2022
  • XevaDB Public

    XevaDB is a database for PDX pharmacogenomic data.

    JavaScript 0 0 13 0 Updated May 23, 2022
  • CoreGx Public

    Shared code for both PharmacoGx and RadioGx

  • snakemake-kubernetes-api Public

    Flask API to be used as the new data processing layer of ORCESTRA.

    Python 0 0 0 0 Updated May 20, 2022
  • ptl-oar-segmentation Public

    Boilerplate for PyTorch Lightning based medical-image segmentation pipeline for to enable automated segmentation of organs-at-risk (in head and neck cancer) by using Simple Open-Source 3D CNNS

    Jupyter Notebook 3 Apache-2.0 0 0 0 Updated May 20, 2022
  • R 0 1 0 0 Updated May 19, 2022
  • JAKSTAT Public

    PSet generation scripts for datasets shared by JAK STAT partners.

    R 0 0 0 0 Updated May 20, 2022