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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 64 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 31 8

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

Repositories

Showing 10 of 173 repositories
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 4 Apache-2.0 2 15 8 Updated Sep 18, 2024
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Python 3 MIT 0 4 0 Updated Sep 17, 2024
  • CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    bhklab/CoreGx’s past year of commit activity
    R 2 GPL-3.0 3 11 (1 issue needs help) 0 Updated Sep 12, 2024
  • PharmacogenomicsWorkshop2024 Public
    bhklab/PharmacogenomicsWorkshop2024’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 10, 2024
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 31 MIT 8 15 6 Updated Sep 3, 2024
  • PMATCH-web Public
    bhklab/PMATCH-web’s past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 14, 2024
  • orcestra-new-api Public
    bhklab/orcestra-new-api’s past year of commit activity
    Python 0 1 0 0 Updated Aug 1, 2024
  • SCARF Public
    bhklab/SCARF’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 0 0 Updated Aug 1, 2024
  • CervixRadiomics Public
    bhklab/CervixRadiomics’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 29, 2024
  • PredictIO_Nextflow Public
    bhklab/PredictIO_Nextflow’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jul 18, 2024
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