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Pinned repositories

PharmacoDB

Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.

JavaScript 25 7
DrugNetworkFusion

Web resource for inferring new hypotheses about the mode of action of chemical compounds prior to clinical use

JavaScript 2
CrosstalkNet

A web resource to analyze bi-partite and non-bipartite biological networks.

JavaScript 3 7
PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.

R 24 17
DNF

Drug Network Fusion: Data integration from multiple drug information layers

R 3 4
genefu

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

R 13 7

pharmacodb_scripts

Python 0 0 0 0 Updated Jan 20, 2020
ToxicoGx

A statistical package, in R, used in cancer research to analyze toxicity of drugs on cancer gene expression across large-scale toxicogenomic datasets.

R 1 1 0 0 Updated Jan 20, 2020
ORCESTRA

JavaScript 0 1 0 0 Updated Jan 17, 2020
consensusOV

Implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer.

cancer-genomics ovarian-cancer cancer-research cancer-data expression-database

R 3 3 1 0 Updated Jan 17, 2020
wCI

Modified Concordance Index for pharmacological readout

R 2 0 7 0 Updated Jan 15, 2020
mRMRe

mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

cran

C++ 5 11 11 1 Updated Jan 5, 2020
CrosstalkNet

A web resource to analyze bi-partite and non-bipartite biological networks.

biological-networks

JavaScript 7 3 0 2 Updated Dec 26, 2019
CoreGx

Shared code for both PharmacoGx and RadioGx

pharmacogx-backend radiogx pharmacogx

R 1 0 94 0 Updated Dec 19, 2019
RadioGx

RadioGx and PharmacoGx: Integrated prediction tools for combining radiotherapy with systemic agents

R 6 1 5 0 Updated Dec 19, 2019
CREAM

CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.

clustering biomedical-informatics peak-detection functional-prediction

R 2 7 0 0 Updated Dec 15, 2019
Xeva

XEnograft Visualization & Analysis

R 2 4 5 1 Updated Dec 11, 2019
PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.

datasets pharmacogx pharmacogenomic

R 17 24 45 0 Updated Nov 18, 2019
fastCI

A nlogn implementation of the Concordance Index

R 0 0 5 0 Updated Nov 6, 2019
CMapBox

R 0 0 0 0 Updated Oct 24, 2019
DNF

Drug Network Fusion: Data integration from multiple drug information layers

analysis

R 4 3 1 0 Updated Oct 19, 2019
ConsensusPGxPaper

HTML 0 1 0 0 Updated Sep 18, 2019
BreastPDTX

R 1 0 0 0 Updated Sep 16, 2019
DNFAPI

R 0 0 0 0 Updated Aug 30, 2019
longArray

longArray Example

R 1 1 1 0 Updated Aug 6, 2019
CellLineConcordance

R 0 0 0 0 Updated Jul 31, 2019
ISMB-2019

HTML 0 2 0 0 Updated Jul 21, 2019
RLOBICO

R implementation of Logic Optimization for Binary Input to Continuous Output (LOBICO)

R 1 3 2 0 Updated Jul 18, 2019
TNBC_BAY-876

R 0 0 0 0 Updated Jul 16, 2019
PharmacoGxML

Workshop for Machine Learning in pharmacogenomics

R 2 5 0 0 Updated Jul 8, 2019
RadioGx-analysis

R 1 0 0 0 Updated Jun 25, 2019
PRMT5i_GBM

R 0 0 0 0 Updated May 30, 2019
LinePlotDigitizer

0 0 0 0 Updated May 6, 2019
PGxCWL

R 0 0 0 0 Updated Apr 13, 2019
MetaGxOvarian

R 2 1 0 0 Updated Apr 11, 2019
MetaGxPancreas

R 3 0 0 0 Updated Apr 9, 2019

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