v1.4.4

v1.4.4 (2024-05-30)

Fix

• fix: update docker image reference (91b3c05)

v1.4.3

v1.4.3 (2024-05-30)

Chore

• chore: update dependencies and workflow for continuous deployment (d400520)

Fix

• fix: force build (45cab79)

v1.4.2

v1.4.2 (2024-05-30)

Fix

• fix: tag version in dockerfile (1b06ed8)

v1.4.1

v1.4.1 (2024-05-30)

Fix

• fix: add auto build docker (e1a58cd)

v1.4.0

v1.4.0 (2024-05-29)

Feature

• feat(pipeline): added random seed command line argument for negative control creation (405fa74)

• feat(feature_extraction): added argument random seed for negative control creation (053d542)

Unknown

• Merge pull request #23 from bhklab/development_katy

Adding negative control to main pipeline and feature extraction functions (0afc838)

v1.3.4

v1.3.4 (2024-05-16)

Fix

• fix: poetry lock (0632d5a)

• fix: pyradiomics original (4ab6aa7)

• fix: pyradiomics original (9513427)

v1.3.3

v1.3.3 (2024-05-16)

Fix

• fix: install poetry (c1a905a)

v1.3.2

v1.3.2 (2024-05-16)

Fix

• fix: update lock (18054bd)

• fix: no docker buils (e0a8e63)

v1.3.1

v1.3.1 (2024-05-16)

Fix

• fix: update readme with docker link

fix: update readme with docker link (4584af7)

• fix: update readme with docker link (2f9a437)

v1.3.0

v1.3.0 (2024-05-16)

Build

• build(poetry.lock): updated package versions (811b748)

Documentation

• docs(negative_controls): add random seed description to shuffleImage function header (df9a7d3)

• docs(example.ipynb): update notebook to use med-imagetools CT DICOM loader (e6339b7)

Feature

• feat(negative_controls): added random seed to all random functions and the apply negative control function (280b465)

• feat(negative_controls): add random seed to shuffleNonROI (a402ee5)

• feat(negative_controls): add random seed to shuffleROI (826b00d)

• feat(negative_controls): added random seed to shuffleImage function, now using numpy RNG and shuffle function (a2556ae)

Fix

• fix(negative_controls): set random generated pixel value to int to work with SetPixel (8d9b071)

• fix(negative_controls): cast result from randNumGen.integers to int for sitk SetPixel function to fix type error (257c498)

• fix(image_processing): correctedROIImage was assigned to unused variabel, changed to segImage (453402e)

• fix(test_negative_controls): makeRandomImage test was using incorrect function (shuffleImage) (143712a)

Style

• style(feature_extraction): fix typo in randomizeImageFromDistributionSampling import (79dc539)

• style(negative_controls): fix spelling of distribution in randomizeImageFromDistributionSampling (4a01f5c)

Test

• test(negative_controls): added tests for no roiLabel input for ROI and non-ROI negative control functions (c083878)

• test(negative_controls): removed redundant random pixel checks and added some checks for any change in the negative controls, updated some assertion failure messages (4ca434b)

• test(negative_controls): update whole image pixel checks and remove random pixel checks in shuffleNonROI and makeRandomRoi (b970cbe)

• test(negative_controls): update assertion comment in shuffle ROI (0c542f4)

• test(negative_controls): fix the shuffle check that the same values exist in the new image in shuffleROI (6de291d)

• test(negative_controls): in makeRandomImage, added ROI voxel check, removed random pixel check as its covered by the randomSeed checks (17ca738)

• test(negative_controls): Added pixel check for centre of ROI, updated failed assertion message for randomSeed pixel checks (ed3bb17)

• test(negative_controls): updated shuffle pixel check that values are the same as original (52dda33)

• test(negative_controls): added random seed to rest of functions, changed conversion to pixels to include whole image not just region that's been altered (28db728)

• test(negative_controls): added random seed to shuffleROI and randomROI tests, updated negative control image variable to be clearer (e09c142)

• test(negative_controls): add random seed in shuffleROI test (d12ac25)

• test(negative_controls): updated nsclcCropped fixture to use getCroppedImages function (24dafff)

• test(negative_controls): add random seed to make random image (6979ac6)

• test(negative_controls): add random seed to shuffle image test (c07c50e)

Unknown

• Merge pull request #19 from bhklab/add_random_seed

Adding random seed to all negative controls for reproducible results (26d8cbc)