GitHub - bianlab-hub/zuo_ncomms

Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
Fig2h_Vara_ChIP_coolpup.sh		Fig2h_Vara_ChIP_coolpup.sh
Fig3bc_fetch_interactions.py		Fig3bc_fetch_interactions.py
Fig4_calculate_region_expected_A_B.py		Fig4_calculate_region_expected_A_B.py
Fig4_calculate_region_expected_A_B_each_region.py		Fig4_calculate_region_expected_A_B_each_region.py
Fig4_compartment_domain_size_selection.R		Fig4_compartment_domain_size_selection.R
Fig4d_plot_A_B_compartment_obs_vs_distances.R		Fig4d_plot_A_B_compartment_obs_vs_distances.R
Fig4e_plot_A_B_compartment_scaling_derivative.R		Fig4e_plot_A_B_compartment_scaling_derivative.R
Fig5_calculate_average_interaction_at_500kb_for_ABcompartment_region.R		Fig5_calculate_average_interaction_at_500kb_for_ABcompartment_region.R
Fig5bc_compartment_vs_alignment_A_region_groups_larger_than_1Mb.R		Fig5bc_compartment_vs_alignment_A_region_groups_larger_than_1Mb.R
Fig5bc_inter_homolog_alignment_score.py		Fig5bc_inter_homolog_alignment_score.py
Fig5d-h_CO_DSB_vs_Z_stage_loopsize_plotting_202104 1.R		Fig5d-h_CO_DSB_vs_Z_stage_loopsize_plotting_202104 1.R
Fig5d-h_DSB_CO_distribution_prepdata.R		Fig5d-h_DSB_CO_distribution_prepdata.R
Fig6a-d_fetch_trans_corner_regions.py		Fig6a-d_fetch_trans_corner_regions.py
Fig6a-d_plottting_chr_ends_trans_interactions_5M.R		Fig6a-d_plottting_chr_ends_trans_interactions_5M.R
Fig6e_plot_average_trans_OE_all_stage.py		Fig6e_plot_average_trans_OE_all_stage.py
Fig6f_7f_S18_trans_oe_pileup_vs_chr_position_smooth_1_3.R		Fig6f_7f_S18_trans_oe_pileup_vs_chr_position_smooth_1_3.R
Fig6g_compartment_vs_inter-homolog_alignment.R		Fig6g_compartment_vs_inter-homolog_alignment.R
FigS11g_quantify_TAD_boundary_strength.R		FigS11g_quantify_TAD_boundary_strength.R
FigS11h_TAD_boundary_pileup_coolpup.sh		FigS11h_TAD_boundary_pileup_coolpup.sh
FigS12_plot_ctcf_peak_profile_deeptools.sh		FigS12_plot_ctcf_peak_profile_deeptools.sh
FigS13_peaks_vs_insulation_score_202103.R		FigS13_peaks_vs_insulation_score_202103.R
FigS15ab_meiosis_compartment_switch.R		FigS15ab_meiosis_compartment_switch.R
FigS19_A_B_compartment_scaing_end_vs_center.R		FigS19_A_B_compartment_scaing_end_vs_center.R
batch_eigen_decomposition_mm10.py		batch_eigen_decomposition_mm10.py
cooltools_batch_insulation.sh		cooltools_batch_insulation.sh
fig1f_plot_obs_heatmap.py		fig1f_plot_obs_heatmap.py
fig2ab_autosomes_interaction_versus_distance_keep_diag.py		fig2ab_autosomes_interaction_versus_distance_keep_diag.py
fig2ab_plot_autosomes_scaling.R		fig2ab_plot_autosomes_scaling.R
fig2cd_autosomes_scaling_derivatives.R		fig2cd_autosomes_scaling_derivatives.R
fig4a_plot_cis.py		fig4a_plot_cis.py
fig4c_plot_oe.py		fig4c_plot_oe.py
fig6e_trans_pileup.py		fig6e_trans_pileup.py
figS14.R		figS14.R
figS4_hicrep.R		figS4_hicrep.R
figS6_scaling_rep.R		figS6_scaling_rep.R
figS7-10_plot_chrX_scaling..R		figS7-10_plot_chrX_scaling..R
figS7-8_single_autosome_scaling.R		figS7-8_single_autosome_scaling.R
figS9-10_single_autosomes_scaling_slope.R		figS9-10_single_autosomes_scaling_slope.R

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