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[FIX] Remove references to unspecified aslcontext.json #1485

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merged 10 commits into from May 21, 2023

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Remi-Gau
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@Remi-Gau Remi-Gau commented May 3, 2023

fixes #1479

  • remove aslcontext.json
  • add png and tif extensions for asllabelling
  • add paragraph describing asllabelling images

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codecov bot commented May 3, 2023

Codecov Report

Patch and project coverage have no change.

Comparison is base (d7f6cae) 87.75% compared to head (84acaef) 87.75%.

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #1485   +/-   ##
=======================================
  Coverage   87.75%   87.75%           
=======================================
  Files          14       14           
  Lines        1282     1282           
=======================================
  Hits         1125     1125           
  Misses        157      157           

☔ View full report in Codecov by Sentry.
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@Remi-Gau Remi-Gau marked this pull request as ready for review May 3, 2023 07:33
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@tsalo tsalo left a comment

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Everything looks good to me, except for the wording of the paragraph about the asllabeling file.

Remi-Gau and others added 2 commits May 4, 2023 13:59
Co-authored-by: Taylor Salo <tsalo90@gmail.com>
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LGTM!

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@effigies effigies left a comment

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One small suggestion and an additional suggestion for a follow-up PR.

Comment on lines +909 to +911
An anonymized screenshot of the planning of the labeling slab/plane
with respect to the imaging slab or slices.
This screenshot is based on DICOM macro C.8.13.5.14.
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If we're going to copy directly from the schema, it would be better to move to something like:

{{ MACROS_render_text("objects.suffixes.asllabeling.description") }}

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you mean creating a new macro then, right?

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I believe this relates to this:
#1038

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Remi-Gau commented May 4, 2023

I would suggest we wait for some ASL BEP lead to also approve this before merging.

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effigies commented May 4, 2023

@patsycle @HenkMutsaerts In case you missed the review request...

@effigies effigies changed the title [FIX] remove aslcontext.json [FIX] Remove references to unspecified aslcontext.json May 11, 2023
Co-authored-by: Chris Markiewicz <effigies@gmail.com>
@effigies effigies merged commit d5c5fce into bids-standard:master May 21, 2023
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@Remi-Gau Remi-Gau deleted the fix-alscontext branch May 21, 2023 14:41
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[BUG] *_aslcontext.json should probably not be in the spec
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