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[ENH] Add Level objects to channels.json for motion #1591

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merged 18 commits into from Oct 25, 2023

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effigies
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@effigies effigies commented Aug 22, 2023

This was initially comments on #1524, but it became a lot and easier to just make a proposal. Making pull requests against other people's branches often fails, so might as well just make an alternative PR.

The things worth noting:

  1. This is essentially taking allow Levels values (in sidecar for TSV files) to be objects #1573 as accepted. I'm fine with it, but this is a change from the current spec, where these fields MUST be strings. This probably needs a PR on its own.
    image
  2. I think adding "n/a" is strictly worse than omitting a field. In one case I can test for presence.
  3. "ReferenceFrameDescription" is redundant when it is in sidecar.reference_frame.Levels.<rf_name> object. I just changed it to Description.

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codecov bot commented Aug 22, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (28beccd) 87.83% compared to head (6ab3e00) 87.83%.
Report is 82 commits behind head on master.

❗ Current head 6ab3e00 differs from pull request most recent head 4645fd1. Consider uploading reports for the commit 4645fd1 to get more accurate results

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #1591   +/-   ##
=======================================
  Coverage   87.83%   87.83%           
=======================================
  Files          16       16           
  Lines        1356     1356           
=======================================
  Hits         1191     1191           
  Misses        165      165           

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sjeung added a commit to sjeung/bids-specification that referenced this pull request Oct 5, 2023
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sjeung commented Oct 5, 2023

Thank you, I agree with all of the proposed changes.

Example data sets in this PR reflects them already (renamed ReferenceFrameDescription -> Description).
Once Julius approves my change to spec this PR will be up to date with it too. (Removed unnecessary n/a options and renamed ReferenceFrameDescription -> Description)

  1. This is essentially taking allow Levels values (in sidecar for TSV files) to be objects #1573 as accepted. I'm fine with it, but this is a change from the current spec, where these fields MUST be strings. This probably needs a PR on its own.

Do you plan to open this one or should I have a look into implementing this?

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effigies commented Oct 6, 2023

Do you plan to open this one or should I have a look into implementing this?

That was done in #1603.

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I think mentioning Description is a good idea, but feel free to ignore if you disagree. Anyhow, +1 to merge

src/schema/objects/columns.yaml Outdated Show resolved Hide resolved
Co-authored-by: Stefan Appelhoff <stefan.appelhoff@mailbox.org>
@sappelhoff sappelhoff merged commit efbe6ab into bids-standard:master Oct 25, 2023
23 of 24 checks passed
@sappelhoff sappelhoff added this to the 1.9.0 milestone Oct 26, 2023
@effigies effigies deleted the channels-json branch November 2, 2023 19:17
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5 participants