Fix to unit test.

bigdatagenomics · Apr 11, 2017 · 2d9cb2c · 2d9cb2c
1 parent 399b33a
commit 2d9cb2c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/adam-cli/src/test/scala/org/bdgenomics/adam/cli/TransformSuite.scala b/adam-cli/src/test/scala/org/bdgenomics/adam/cli/TransformSuite.scala
@@ -60,7 +60,7 @@ class TransformSuite extends ADAMFunSuite {
   sparkTest("put quality scores into bins") {
     val inputPath = copyResource("bqsr1.sam")
     val finalPath = tmpFile("binned.adam")
-    Transform(Array(inputPath, finalPath, "-bin_quality_scores", "0,20,10;20,40,30;40,60,50"))
+    Transform(Array(inputPath, finalPath, "-bin_quality_scores", "0,20,10;20,40,30;40,60,50")).run(sc)
     val qualityScoreCounts = sc.loadAlignments(finalPath)
       .rdd
       .flatMap(_.getQual)