Merge 25002b5 into cc7e447

bigdatagenomics · Feb 3, 2018 · 6bd0dc9 · 6bd0dc9
2 parents cc7e447 + 25002b5
commit 6bd0dc9
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala b/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
@@ -1150,8 +1150,11 @@ class ADAMContext(@transient val sc: SparkContext) extends Serializable with Log
   }
 
   private def readVcfHeader(pathName: String): VCFHeader = {
-    VCFHeaderReader.readHeaderFrom(WrapSeekable.openPath(sc.hadoopConfiguration,
-      new Path(pathName)))
+    val is = WrapSeekable.openPath(sc.hadoopConfiguration,
+      new Path(pathName))
+    val header = VCFHeaderReader.readHeaderFrom(is)
+    is.close()
+    header
   }
 
   private def loadHeaderLines(pathName: String): Seq[VCFHeaderLine] = {