VariantCallingAnnotations is getting populated with INFO fields #1063

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fnothaft opened this Issue Jul 1, 2016 · 1 comment

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fnothaft commented Jul 1, 2016

See https://github.com/bigdatagenomics/adam/blob/master/adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantAnnotationConverter.scala#L112. Variant calling annotations should be populated from the per-sample GT "FORMAT" fields, not INFO fields.

@fnothaft fnothaft added the bug label Jul 1, 2016

@heuermh heuermh referenced this issue Jul 18, 2016

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Release ADAM version 0.20.0 #1048

47 of 61 tasks complete

@heuermh heuermh modified the milestone: 0.20.0 Jul 18, 2016

@heuermh heuermh modified the milestones: 0.20.0, 0.22.0, 0.21.0 Oct 13, 2016

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heuermh Jan 5, 2017

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Fixed by #1288

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heuermh commented Jan 5, 2017

Fixed by #1288

@heuermh heuermh closed this Jan 5, 2017

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