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More of a tracking issue than anything else; something to investigate before the next ADAM release.
Spark 2.1.0 and ADAM 0.21.0 and an explicit dependency on Guava version 19.0 results in runtime conflicts
$ adam-shell --jars dsh-bio-adam-1.0-SNAPSHOT.jar:/usr/local/Cellar/adam/0.21.0/libexec/repo/adam_2.11-0.21.0.jar
...
scala> val features = dac.loadGff3("dvl1.200.gff3")
java.lang.NoSuchMethodError: com.google.common.base.Splitter.splitToList(Ljava/lang/CharSequence;)Ljava/util/List;
at org.dishevelled.bio.feature.Gff3Record.valueOf(Gff3Record.java:287)
at org.dishevelled.bio.feature.Gff3Reader$Gff3LineProcessor.processLine(Gff3Reader.java:112)
at com.google.common.io.CharStreams.readLines(CharStreams.java:369)
at org.dishevelled.bio.feature.Gff3Reader.stream(Gff3Reader.java:77)
at org.dishevelled.bio.feature.Gff3Reader.read(Gff3Reader.java:61)
at org.dishevelled.bio.adam.DishevelledAdamContext.loadGff3(DishevelledAdamContext.java:121)
... 48 elided
The text was updated successfully, but these errors were encountered:
More of a tracking issue than anything else; something to investigate before the next ADAM release.
Spark 2.1.0 and ADAM 0.21.0 and an explicit dependency on Guava version 19.0 results in runtime conflicts
The text was updated successfully, but these errors were encountered: