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working examples on .sam included in repo #466

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merged 4 commits into from Nov 7, 2014

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@allenday
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allenday commented Nov 6, 2014

getting up and running, so I thought I'd freshen the README.

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AmplabJenkins Nov 6, 2014

Can one of the admins verify this patch?

AmplabJenkins commented Nov 6, 2014

Can one of the admins verify this patch?

```
$ adam
$ adam-local

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@ryan-williams

ryan-williams Nov 6, 2014

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I was meaning to do this, thank you!

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ryan-williams Nov 6, 2014

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I was meaning to do this, thank you!

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fnothaft Nov 6, 2014

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Thanks @allenday! This is great.

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fnothaft commented Nov 6, 2014

Thanks @allenday! This is great.

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allenday Nov 6, 2014

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changed from "adam-local" to "adam-submit" where requested. also added link to the "small.sam" file for context.

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allenday commented Nov 6, 2014

changed from "adam-local" to "adam-submit" where requested. also added link to the "small.sam" file for context.

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allenday Nov 6, 2014

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I'm having trouble using the "adam-submit" command with the example, which assumes that the input file is already located somewhere on hdfs:// maprfs://.

If we want to use "adam-submit" in the examples then a preamble is required to stage the data into the DFS.

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allenday commented Nov 6, 2014

I'm having trouble using the "adam-submit" command with the example, which assumes that the input file is already located somewhere on hdfs:// maprfs://.

If we want to use "adam-submit" in the examples then a preamble is required to stage the data into the DFS.

massie added a commit that referenced this pull request Nov 7, 2014

Merge pull request #466 from allenday/master
working examples on .sam included in repo

@massie massie merged commit 0fdc439 into bigdatagenomics:master Nov 7, 2014

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massie Nov 7, 2014

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Thanks, Allen!

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massie commented Nov 7, 2014

Thanks, Allen!

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