Update README and cleanup top-level cli help text #81
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All automated tests passed. |
| transform : Apply one of more transforms to an ADAM file and save the results to another ADAM file | ||
| flagstat : Prints statistics for ADAM data similar to samtools flagstat | ||
| transform : Convert SAM/BAM to ADAM format and optionally perform read pre-processing transformations | ||
| flagstat : Print statistics on reads in an ADAM file (similar to samtools flagstat) |
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It seems that we're going to underscores as a word delimiter. In that case, shouldn't this become flag_stat?
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Yes. Underscore is being used as the delimiter instead of camel case.
I'm not sure that we need to split up all commands especially the shorter ones. Some commands will be useful primarily in scripts whereas commands like listdict and flagstat will more likely be used from the commandline to inspect data. Requiring users to type the underscore will be a bit of a nuisance.
fnothaft
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Feb 4, 2014
Update README and cleanup top-level cli help text
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