Targeted sequencing panel metrics #18
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Adds modules for computing coverage counts, as well as aggregate statistics. On this, we provide a CLI for computing these stats. Resolves bigdatagenomics#14.
* Added quality control tool that is similar to the Picard `HsMetrics` tool. * Added functionality to the `CoverageStats` class to enable more detailed coverage distribution stat reporting. * Factored code to optionally write stats to a file out into the `org.bdgenomics.quinine.cli.StatWriter` object. Resolves bigdatagenomics#15.
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Resolves #14, #15.