fix: eb_filter wrapper assuming ANN/CSQ is present #506
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…nappy-pipeline into fix-eb-filter-nonexistent-ann
ericblanc20
requested changes
Apr 29, 2024
snappy_pipeline/workflows/somatic_variant_filtration/__init__.py
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…nappy-pipeline into fix-eb-filter-nonexistent-ann
ericblanc20
approved these changes
May 6, 2024
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ANN/CSQ information is only present when the input VCFs are from variant annotation; however, it is also possible to skip annotation and filter non-annotated calls, in which case no ANN is available.
I do not know anything about ebfilter, so I am not sure about the effect this change has (on non-annotated data only).
edit This PR is based on #505