For PPI task, run PPIExpTrain.py to train, the default path of concept and relation will under the ./data/classPPIEmbed.pkl and ./data/relationPPIEmbed.pkl. The parameter can modify in the file.
then run evaluate_interactions.py to test, the output will show the result of ELBE. The results of other methods can be found at https://arxiv.org/pdf/1902.10499.pdf .
For EEC task, run EECExpTrain.py to train then run EECExpTest.py to get the result of ELBE.
run BallEECExpTrain.py to train then run BallEECExpTest.py to get the result of ELEm.
When run the train.py, the command line will output the triple, copy them to ELBE/data/data-train/interGo.txt.
torch=1.9.0
absl-py==0.7.0
astor==0.7.1
Click==7.0
cycler==0.10.0
gast==0.2.2
grpcio==1.18.0
h5py==2.9.0
matplotlib==3.0.2
numpy==1.16.0
pandas==0.23.4
protobuf==3.6.1
pyparsing==2.3.1
python-dateutil==2.7.5
pytz==2018.9
scikit-learn==0.20.2
scipy==1.2.0
six==1.12.0