@bio4j

bio4j

graph-based cloud-enabled bio data platform

Pinned repositories

  1. bio4j

    Bio4j abstract model and general entry point to the project

    Java 95 15

  2. angulillos

    Java 8 library for strongly typed graph data

    Java 5 1

  3. angulillos-titan

    use Titan with a lot of angulillos

    Java 3 1

  • Data import for standard open data

    Scala Updated Nov 23, 2016
  • UniProt entry ADT and parsers

    Scala Updated Nov 10, 2016
  • Gene Ontology data ADT and parsers

    Scala Updated Nov 9, 2016
  • UniRef data ADT and parsers

    Scala Updated Nov 9, 2016
  • NCBI taxonomy data ADT and column-based file parsers

    Scala Updated Nov 6, 2016
  • ENZYME data ADT and flat file parser

    Scala Updated Nov 5, 2016
  • Java 8 library for strongly typed graph data

    Java 5 1 Updated Oct 29, 2016
  • Scala Updated Oct 18, 2016
  • Bio4j abstract model and general entry point to the project

    Java 95 15 Updated Oct 17, 2016
  • use Titan with a lot of angulillos

    Java 3 1 Updated Oct 16, 2016
  • XML Streaming for Scala

    Scala 7 Updated Jun 7, 2016
  • use Neo4j with a lot of angulillos!

    Java Updated May 16, 2016
  • Titan-specific bio4j implementation

    Java 5 1 Updated Mar 14, 2016
  • Statika-based bio4j module system

    JavaScript 1 Updated Mar 11, 2016
  • Bio4j usage examples

    Java 6 1 Updated Aug 31, 2015
  • JSON serialization related classes for Bio4j entities used in Java programs

    Java Updated Apr 15, 2015
  • bio4j.com website

    HTML Updated Mar 23, 2015
  • Java Updated Mar 5, 2015
  • project ideas for Google Summer of Code 2015

    4 1 Updated Feb 20, 2015
  • Scala 2 Updated Feb 1, 2015
  • Java Updated Dec 9, 2014
  • Neo4j-specific implementation of Bio4j

    Java 5 3 Updated Dec 4, 2014
  • slides from the two bio4j sessions in the graph processing devroom

    JavaScript Updated Oct 8, 2014
  • GSoC 2014 project - D3-based Bio4j data model visualization

    JavaScript 1 1 Updated Oct 1, 2014
  • GSoC 2014 project

    Java 3 3 Updated Aug 22, 2014
  • GSoC 2014 project - a DynamoDB based graph DB

    Scala 3 1 Updated Aug 18, 2014
  • distributed writing code for dynamograph

    Scala 1 Updated Aug 17, 2014
  • An http service to discover Bio4j doman model

    Scala Updated Jun 28, 2014
  • Giter8 template for a new Bio4j module

    Scala Updated May 7, 2014
  • Bio4j default Blueprints model implementation

    Java 1 Updated May 7, 2014