@bioboxes

bioboxes

Standards for Interchangeable Bioinformatics Containers

Pinned repositories

  1. rfc

    Request for comments on interchangeable bioinformatics containers

    39 8

  2. bioboxes.org

    The website for bioboxes

    JavaScript 7 7

  3. command-line-interface

    Command line interface for running and verifying biobox images

    Gherkin 5 6

  • Shell 1 Updated Aug 3, 2018
  • Common Workflow Language Updated Aug 2, 2018
  • GATB minia pipeline biobox

    Shell Updated Jun 23, 2018
  • Shell Updated May 28, 2018
  • Updated May 25, 2018
  • Shell Updated May 18, 2018
  • Shell 1 Updated Dec 21, 2017
  • Shell 1 Updated Dec 15, 2017
  • Biobox of assembly pipeline used at the JGI for single cell data

    Shell 1 Updated Dec 9, 2017
  • Shell Updated Dec 8, 2017
  • Request for comments on interchangeable bioinformatics containers

    39 8 MIT Updated Oct 4, 2017
  • Shell 1 2 Updated Sep 13, 2017
  • Shell Updated Sep 13, 2017
  • Genome assembler pipeline using spades and fastq preprocessors

    Shell Updated Sep 7, 2017
  • Command line interface for running and verifying biobox images

    Gherkin 5 6 MIT Updated Sep 1, 2017
  • Makefile Updated Jul 14, 2017
  • The website for bioboxes

    JavaScript 7 7 MIT Updated Jun 9, 2017
  • Shell Updated Jun 8, 2017
  • A minimal base image with biobox software installed

    Shell 1 1 Updated Jun 8, 2017
  • Python library for creating and running bioboxes

    2 2 Updated May 8, 2017
  • Shell Updated Apr 25, 2017
  • Shell 2 Updated Apr 13, 2017
  • Validate that biobox.yaml files are correct.

    Python 1 Updated Mar 24, 2017
  • Shell Updated Mar 10, 2017
  • 2 Updated Feb 17, 2017
  • LightAssembler genome assembler

    Shell 2 Updated Feb 11, 2017
  • Template for creating a biobox Docker image

    1 Updated Feb 11, 2017
  • Perl 4 Updated Feb 10, 2017
  • Python Updated Feb 2, 2017
  • Docker image for testing biobox tool interfaces

    Shell Updated Jan 19, 2017