Pierre-Luc Germain, 08.04.2021
D-HEST Institute for Neurosciences, ETH Zürich & Laboratory of Statistical Bioinformatics, University Zürich
The sechm package is essentially a convenient wrapper around the ComplexHeatmap engine, facilitating the creation of heatmaps from SummarizedExperiment objects. This was formerly part of the SEtools package.
Install with:
BiocManager::install("plger/sechm")Example usage:
sechm(SE, features=myGenes, top_annotation="Time", do.scale=TRUE, gaps_at="Condition",
mark=c("Gm14288","Fos","Arc"))
See the package's vignette for more information!