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generalize g_to_c/n as g_to_t to simultaneously support coding and non-coding transcripts #316

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reece opened this issue Feb 25, 2016 · 1 comment
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reece commented Feb 25, 2016

Originally reported by: Reece Hart (Bitbucket: reece, GitHub: reece)


If a user fetches accessions from relevant_transcripts(), they may including coding and non-coding.

When using those transcripts, users should call g_to_c with coding transcripts and g_to_n with non-coding transcripts. Calling g_to_c with a non-coding transcript results in an exception.

This proposal is to add g_to_t, with a call signature identical to g_to_c/n, that will transparently project to the correct type.

Conversely, a general t_to_g method would project from either transcript type to genomic coordinates.


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reece commented Sep 20, 2016

Original comment by Reece Hart (Bitbucket: reece, GitHub: reece):


closes #316: provide generalized transcript-to-genome projects to handle coding and non-coding transcripts transparently

@reece reece added minor enhancement New feature or request labels Mar 9, 2017
@reece reece added this to the 0.5.0 milestone Mar 9, 2017
@reece reece closed this as completed Mar 9, 2017
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