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raise exception when CDS numbering is discontinuous #386

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reece opened this issue Nov 6, 2016 · 1 comment
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raise exception when CDS numbering is discontinuous #386

reece opened this issue Nov 6, 2016 · 1 comment
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reece commented Nov 6, 2016

Originally reported by: Reece Hart (Bitbucket: reece, GitHub: reece)

See #385.

As a temporary fix, hgvs should raise an exception when CDS numbering is discontinuous. The fix probably belongs in build_tx_cigar() where the cigar is constructed or in TranscriptMapper.__init__() which calls it.

Fix in 0.4.0 and graft to 0.5.0dev.
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reece commented Dec 7, 2016

Original comment by Reece Hart (Bitbucket: reece, GitHub: reece):

closes #386: reject discontiguous alignments

@reece reece added critical bug Something isn't working labels Mar 9, 2017
@reece reece added this to the 0.4.x milestone Mar 9, 2017
@reece reece closed this as completed Mar 9, 2017
@reece reece mentioned this issue Mar 9, 2017
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@reece reece mentioned this issue Mar 9, 2017
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reece added a commit that referenced this issue Apr 21, 2019
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#386: reject discontiguous alignments
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