A few final fixes for OSX (#12935)

bioconda · Jan 6, 2019 · 1237a02 · 1237a02
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commit 1237a02
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Showing 4 changed files with 15 additions and 18 deletions.
diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -957,7 +957,7 @@ recipes/r-xgr
 recipes/bioconductor-pi
 recipes/bioconductor-glad
 recipes/bioconductor-snapcgh
-recipe/bioconductor-adacgh2
+recipes/bioconductor-adacgh2
 recipes/bioconductor-manor
 recipes/bioconductor-seqcna
 recipes/bioconductor-ampliqueso

diff --git a/recipes/bioconductor-methimpute/meta.yaml b/recipes/bioconductor-methimpute/meta.yaml
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 466e9af2b8ec9e336784625a07056ac4
+  md5: c63f19357ed780b1cb2cc16eecf61524
 build:
   number: 0
   rpaths:
@@ -51,4 +51,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'This package implements functions for calling methylation for all cytosines in the genome.'
+extra:
+  parent_recipe:
+    name: bioconductor-methimpute
+    path: recipes/bioconductor-methimpute
+    version: 1.4.1
 
diff --git a/recipes/bioconductor-outrider/meta.yaml b/recipes/bioconductor-outrider/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.1" %}
+{% set version = "1.0.2" %}
 {% set name = "OUTRIDER" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41f7e8b72dda3393c624a06b40656903
+  md5: 6a8eea904c51ca4fa9acf23a93cb6fa3
 build:
   number: 0
   rpaths:
@@ -80,5 +80,10 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'MIT + file LICENSE'
-  summary: 'Identification of aberrent gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Further OUTRIDER provides useful plotting function to analyze and visualize the results.'
+  summary: 'Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.'
+extra:
+  parent_recipe:
+    name: bioconductor-outrider
+    path: recipes/bioconductor-outrider
+    version: 1.1.1
 
diff --git a/recipes/r-geoaxe/meta.yaml b/recipes/r-geoaxe/meta.yaml
@@ -23,20 +23,16 @@ build:
 requirements:
   build:
     - {{posix}}zip               # [win]
-
   host:
     - r-base
     - r-jsonlite
     - r-rgeos
     - r-sp
-    - geos
-
   run:
     - r-base
     - r-jsonlite
     - r-rgeos
     - r-sp
-    - geos
 
 test:
   commands:
@@ -50,12 +46,3 @@ about:
   summary: Split 'geospatial' objects into pieces. Includes support for some spatial object inputs,
     'Well-Known Text', and 'GeoJSON'.
   license_family: MIT
-extra:
-  recipe-maintainers:
-    - MathiasHaudgaard
-    - FrodePedersen
-    - ArneKr
-    - johanneskoester
-    - bgruening
-    - daler
-    - jdblischak