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Fix some dependencies #11725

Merged
merged 1 commit into from
Oct 31, 2018
Merged

Fix some dependencies #11725

merged 1 commit into from
Oct 31, 2018

Commits on Oct 31, 2018

  1. Fix some dependencies 

    With phyloseq 1.20:

̀```
Quitting from lines 74-113 (r_beta_diversity.Rmd) 
Error in .C(ape:::node_depth_edgelength, PACKAGE = "ape", as.integer(Ntip),  : 
  Incorrect number of arguments (7), expecting 5 for 'node_depth_edgelength'
Calls: <Anonymous> ... UniFrac -> fastUniFrac -> ape_node_depth_edge_length -> .C

Execution halted
```

With vegan 2.5:

̀```
Quitting from lines 74-113 (r_beta_diversity.Rmd) 
Error in .C("veg_distance", x = as.double(x), nr = N, nc = ncol(x), d = double(N *  : 
  "veg_distance" not available for .C() for package "vegan"
Calls: <Anonymous> ... distance -> do.call -> do.call -> vegdist -> vegdist -> .C

Execution halted
```
    @pbordron
    pbordron committed Oct 31, 2018
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