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[Dont merge] test intarna rebuild #13565

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martin-raden
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@martin-raden martin-raden commented Feb 8, 2019

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

this PR tests why the intarna (re)build is broken...

@martin-raden
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Uaks.. should it be that easy??

@martin-raden
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Was about to ask what has changed in the build system, since this is not working anymore... we will see!
Thanks for joining @bgruening !

@bgruening
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We are using GCC7 now and are about to drop the GCC from the container.

@martin-raden
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So do i need to rebuild viennarna again?

@martin-raden
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Mhh..

checking whether the C++ compiler works... no

configure: error: in `/opt/conda/conda-bld/intarna_1549658229757/work':

configure: error: C++ compiler cannot create executables

See `config.log' for more details

@bgruening
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Jetzt wo du es sagst, ich könnte Hilfe hier gebrauchen ;)

#13465

also see here: https://bioconda.github.io/updating.html#updating-recipes-for-a-pinning-change

@martin-raden
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Seems this goes deeper.. i will stop here for tonight.. bed is calling 😊

@martin-raden
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Aber ich pack mit an.. nächtle!

@bgruening
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Still the same error even with a new viennarna version :(

@martin-raden
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HI @bgruening
thanks for joining, was a mix of new cxx compiler and hard coded gxx in build.sh
👍

@martin-raden martin-raden deleted the Test-intarna-rebuild branch February 9, 2019 19:20
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2 participants