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work on some bioconductor packages #15400

Merged
merged 3 commits into from May 15, 2019
Merged

work on some bioconductor packages #15400

merged 3 commits into from May 15, 2019

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dpryan79
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If this is your first pull request to Bioconda please ping @bioconda/core so it can be reviewed and to request being added as a member of the Bioconda team. Members of the Bioconda team are able to merge their own pull requests once tests and linting have passed.


  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

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biocondabot bot commented May 15, 2019

Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
linux-64 bioconductor-lpsymphony-1.12.0-r351hf484d3e_0.tar.bz2 repodata.json
linux-64 bioconductor-rbowtie2-1.6.0-r351hdbcaa40_0.tar.bz2 repodata.json

You may alsu use conda to install these:

  • For packages in linux-64:
    conda install -c https://57408-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
    

Docker image(s) built:

Package Tag Install with docker
bioconductor-lpsymphony 1.12.0--r351hf484d3e_0
showcurl "https://57408-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bioconductor-lpsymphony%3A1.12.0--r351hf484d3e_0.tar.gz" | gzip -dc | docker load
bioconductor-rbowtie2 1.6.0--r351hdbcaa40_0
showcurl "https://57408-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bioconductor-rbowtie2%3A1.6.0--r351hdbcaa40_0.tar.gz" | gzip -dc | docker load

@dpryan79 dpryan79 merged commit 6dd491c into master May 15, 2019
@dpryan79 dpryan79 deleted the bioc_fixes branch May 15, 2019 20:44
epruesse added a commit to epruesse/bioconda-recipes that referenced this pull request May 15, 2019
* master: (23 commits)
  Bump perl-sub-identify (bioconda#15406)
  Bump perl-extutils-constant (bioconda#15404)
  work on some bioconductor packages (bioconda#15400)
  Bulk (bioconda#15399)
  update medaka to v0.7.0 (bioconda#15398)
  v1.0.6 May 2019 Release (bioconda#15391)
  Bumping varfish-annotator to v0.5. (bioconda#15395)
  update_meta.yaml to fix bug with osx (bioconda#15397)
  PICRUSt2 2.1.3-b --> 2.1.4-b (bioconda#15396)
  update to 2019.5.1 calour release (bioconda#15394)
  Add psascan (bioconda#15386)
  [fpa] update to v0.5 (bioconda#15375)
  Bump sorted_nearest to 0.0.20 (bioconda#15393)
  Bulk (bioconda#15389)
  Bump to latest dropletutils-scripts source (bioconda#15387)
  v1.0.2 May 2019 Release (bioconda#15385)
  Rebuild desman with bcbio-gff (bioconda#15351)
  May 2019 Release (bioconda#15379)
  May 2019 Release (bioconda#15378)
  fineRADstructure (bioconda#14345)
  ...
kpalin pushed a commit to kpalin/bioconda-recipes that referenced this pull request Aug 7, 2019
* trial building some packages

* bioc-cancer should be blacklisted still, update rbowtie2

* skip lpsymphony on OSX
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