Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

work on some bioconductor packages #15400

Merged
merged 3 commits into from
May 15, 2019
Merged

work on some bioconductor packages #15400

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
9dbd1d3
trial building some packages
dpryan79 May 15, 2019
8ccf3ba
bioc-cancer should be blacklisted still, update rbowtie2
dpryan79 May 15, 2019
436a1b9
skip lpsymphony on OSX
dpryan79 May 15, 2019
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
10 changes: 1 addition & 9 deletions build-fail-blacklist
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -720,9 +720,6 @@ recipes/bioconductor-s4vectors/0.8.11
# r-bibitr missing -> missing V8 in conda-forge
recipes/bioconductor-mirsm

# Build never completes
recipes/bioconductor-cancer

# Marked as build fails in bioconductor release 3.9
recipes/bioconductor-birte
recipes/bioconductor-dsimer
Expand Down Expand Up @@ -763,15 +760,9 @@ recipes/bioconductor-biocgenerics
# Source seems to have moved
recipes/discovar

# ld: unknown option: -T
recipes/bioconductor-lpsymphony

# Requires GTK+
recipes/bioconductor-hilbertvisgui

# fatal error: zlib.h: No such file or directory
recipes/bioconductor-rbowtie2

# cannot find -llapack
recipes/bioconductor-tofsims

Expand Down Expand Up @@ -1120,6 +1111,7 @@ recipes/bioconductor-cagefightr
recipes/bioconductor-cager
recipes/bioconductor-camera
recipes/bioconductor-camthc
recipes/bioconductor-cancer
recipes/bioconductor-cancerclass
recipes/bioconductor-cancerdata
recipes/bioconductor-cancermutationanalysis
Expand Down
1 change: 1 addition & 0 deletions recipes/bioconductor-lpsymphony/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@ source:
md5: acce764137f7f9a82443decd693b5efb
build:
number: 0
skip: True # [osx]
rpaths:
- lib/R/lib/
- lib/
Expand Down
2 changes: 1 addition & 1 deletion recipes/bioconductor-rbowtie2/build.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ echo -e "CC=$CC
FC=$FC
CFLAGS=$CFLAGS
CXXFLAGS=$CXXFLAGS
CXX=$CXX
CXX=$CXX -I${PREFIX}/include -L${PREFIX}/lib
CXX98=$CXX
CXX11=$CXX
CXX14=$CXX" > ~/.R/Makevars
Expand Down