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Added a missing file for Kaiju #19977

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merged 2 commits into from Jan 26, 2020
Merged

Added a missing file for Kaiju #19977

merged 2 commits into from Jan 26, 2020

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Finesim97
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@Finesim97 Finesim97 commented Jan 26, 2020

kaiju-excluded-accessions.txt was added in the newest release. Without it, kaiju-makedb crashes for me on the latest version (1.7.3).

$ kaiju-makedb -t 8 -s rvdb
Error: File kaiju-excluded-accessions.txt not found in <condaenv>/bin

It is available next to the executables. Is it ok to place it in the bin dir? The same thing is done for the kaiju-taxonlistEuk.tsv. The location is hard coded.

@pmenzel Just tagged you to notify you of this proposed change.


  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

kaiju-excluded-accessions.txt was added in the newest release
@Finesim97
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Jan 26, 2020
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@pvanheus pvanheus left a comment

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Since the location of this file is hard coded by the program the proposed solution seems to be the only correct one. So I vote +1 for accepting this.

@pvanheus pvanheus merged commit 050cab5 into bioconda:master Jan 26, 2020
@Finesim97
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Thank you very much.

@pmenzel
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pmenzel commented Jan 26, 2020

looks good, thanks!

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4 participants